X-Ray Free-Electron Lasers for the Structure and Dynamics of Macromolecules

被引:122
作者
Chapman, Henry N. [1 ,2 ,3 ]
机构
[1] DESY, Ctr Free Electron Laser Sci, D-22607 Hamburg, Germany
[2] Univ Hamburg, Dept Phys, D-22761 Hamburg, Germany
[3] Univ Hamburg, Ctr Ultrafast Imaging, D-22761 Hamburg, Germany
来源
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 88 | 2019年 / 88卷
关键词
structure determination; time-resolved crystallography; serial crystallography; coherent diffraction; radiation damage; free-electron laser; FEL; SERIAL FEMTOSECOND CRYSTALLOGRAPHY; PROTEIN-STRUCTURE DETERMINATION; PATTERNED SILICON CHIP; CRYSTAL-STRUCTURE; DIFFRACTION DATA; MICROSCOPY; INTENSITY; HOLOGRAPHY; MOLECULES; XFEL;
D O I
10.1146/annurev-biochem-013118-110744
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
X-ray free-electron lasers provide femtosecond-duration pulses of hard X-rays with a peak brightness approximately one billion times greater than is available at synchrotron radiation facilities. One motivation for the development of such X-ray sources was the proposal to obtain structures of macromolecules, macromolecular complexes, and virus particles, without the need for crystallization, through diffraction measurements of single non-crystalline objects. Initial explorations of this idea and of outrunning radiation damage with femtosecond pulses led to the development of serial crystallography and the ability to obtain high-resolution structures of small crystals without the need for cryogenic cooling. This technique allows the understanding of conformational dynamics and enzymatics and the resolution of intermediate states in reactions over timescales of 100 fs to minutes. The promise of more photons per atom recorded in a diffraction pattern than electrons per atom contributing to an electron micrograph may enable diffraction measurements of single molecules, although challenges remain.
引用
收藏
页码:35 / 58
页数:24
相关论文
共 150 条
[1]   Operation of a free-electron laser from the extreme ultraviolet to the water window [J].
Ackermann, W. ;
Asova, G. ;
Ayvazyan, V. ;
Azima, A. ;
Baboi, N. ;
Baehr, J. ;
Balandin, V. ;
Beutner, B. ;
Brandt, A. ;
Bolzmann, A. ;
Brinkmann, R. ;
Brovko, O. I. ;
Castellano, M. ;
Castro, P. ;
Catani, L. ;
Chiadroni, E. ;
Choroba, S. ;
Cianchi, A. ;
Costello, J. T. ;
Cubaynes, D. ;
Dardis, J. ;
Decking, W. ;
Delsim-Hashemi, H. ;
Delserieys, A. ;
Di Pirro, G. ;
Dohlus, M. ;
Duesterer, S. ;
Eckhardt, A. ;
Edwards, H. T. ;
Faatz, B. ;
Feldhaus, J. ;
Floettmann, K. ;
Frisch, J. ;
Froehlich, L. ;
Garvey, T. ;
Gensch, U. ;
Gerth, Ch. ;
Goerler, M. ;
Golubeva, N. ;
Grabosch, H.-J. ;
Grecki, M. ;
Grimm, O. ;
Hacker, K. ;
Hahn, U. ;
Han, J. H. ;
Honkavaara, K. ;
Hott, T. ;
Huening, M. ;
Ivanisenko, Y. ;
Jaeschke, E. .
NATURE PHOTONICS, 2007, 1 (06) :336-342
[2]   AGIPD, a high dynamic range fast detector for the European XFEL [J].
Allahgholi, A. ;
Becker, J. ;
Bianco, L. ;
Delfs, A. ;
Dinapoli, R. ;
Goettlicher, P. ;
Graafsma, H. ;
Greiffenberg, D. ;
Hirsemann, H. ;
Jack, S. ;
Klanner, R. ;
Klyuev, A. ;
Krueger, H. ;
Lange, S. ;
Marras, A. ;
Mezza, D. ;
Mozzanica, A. ;
Rah, S. ;
Xia, Q. ;
Schmitt, B. ;
Schwandt, J. ;
Sheviakov, I. ;
Shi, X. ;
Smoljanin, S. ;
Trunk, U. ;
Zhang, J. ;
Zimmer, M. .
JOURNAL OF INSTRUMENTATION, 2015, 10
[3]  
Altarelli M, 2007, EUROPEAN X RAY FREEE
[4]   The linac coherent light source single particle imaging road map [J].
Aquila, A. ;
Barty, A. ;
Bostedt, C. ;
Boutet, S. ;
Carini, G. ;
dePonte, D. ;
Drell, P. ;
Doniach, S. ;
Downing, K. H. ;
Earnest, T. ;
Elmlund, H. ;
Elser, V. ;
Guehr, M. ;
Hajdu, J. ;
Hastings, J. ;
Hau-Riege, S. P. ;
Huang, Z. ;
Lattman, E. E. ;
Maia, F. R. N. C. ;
Marchesini, S. ;
Ourmazd, A. ;
Pellegrini, C. ;
Santra, R. ;
Schlichting, I. ;
Schroer, C. ;
Spence, J. C. H. ;
Vartanyants, I. A. ;
Wakatsuki, S. ;
Weis, W. I. ;
Williams, G. J. .
STRUCTURAL DYNAMICS-US, 2015, 2 (04)
[5]   Time-resolved protein nanocrystallography using an X-ray free-electron laser [J].
Aquila, Andrew ;
Hunter, Mark S. ;
Doak, R. Bruce ;
Kirian, Richard A. ;
Fromme, Petra ;
White, Thomas A. ;
Andreasson, Jakob ;
Arnlund, David ;
Bajt, Sasa ;
Barends, Thomas R. M. ;
Barthelmess, Miriam ;
Bogan, Michael J. ;
Bostedt, Christoph ;
Bottin, Herve ;
Bozek, John D. ;
Caleman, Carl ;
Coppola, Nicola ;
Davidsson, Jan ;
DePonte, Daniel P. ;
Elser, Veit ;
Epp, Sascha W. ;
Erk, Benjamin ;
Fleckenstein, Holger ;
Foucar, Lutz ;
Frank, Matthias ;
Fromme, Raimund ;
Graafsma, Heinz ;
Grotjohann, Ingo ;
Gumprecht, Lars ;
Hajdu, Janos ;
Hampton, Christina Y. ;
Hartmann, Andreas ;
Hartmann, Robert ;
Hauriege, Stefan ;
Hauser, Guenter ;
Hirsemann, Helmut ;
Holl, Peter ;
Holton, James M. ;
Hoemke, Andre ;
Johansson, Linda ;
Kimmel, Nils ;
Kassemeyer, Stephan ;
Krasniqi, Faton ;
Kuehnel, Kaiuwe ;
Liang, Mengning ;
Lomb, Lukas ;
Malmerberg, Erik ;
Marchesini, Stefano ;
Martin, Andrew V. ;
Maia, Filipe R. N. C. .
OPTICS EXPRESS, 2012, 20 (03) :2706-2716
[6]   Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals [J].
Awel, Salah ;
Kirian, Richard A. ;
Wiedorn, Max O. ;
Beyerlein, Kenneth R. ;
Roth, Nils ;
Horke, Daniel A. ;
Oberthuer, Dominik ;
Knoska, Juraj ;
Mariani, Valerio ;
Morgan, Andrew ;
Adriano, Luigi ;
Tolstikova, Alexandra ;
Xavier, P. Lourdu ;
Yefanov, Oleksandr ;
Aquila, Andrew ;
Barty, Anton ;
Roy-Chowdhury, Shatabdi ;
Hunter, Mark S. ;
James, Daniel ;
Robinson, Joseph S. ;
Weierstall, Uwe ;
Rode, Andrei V. ;
Bajt, Sasa ;
Kuepper, Jochen ;
Chapman, Henry N. .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2018, 51 :133-139
[7]   Macromolecular diffractive imaging using imperfect crystals [J].
Ayyer, Kartik ;
Yefanov, Oleksandr M. ;
Oberthuer, Dominik ;
Roy-Chowdhury, Shatabdi ;
Galli, Lorenzo ;
Mariani, Valerio ;
Basu, Shibom ;
Coe, Jesse ;
Conrad, Chelsie E. ;
Fromme, Raimund ;
Schaffer, Alexander ;
Droener, Katerina ;
James, Daniel ;
Kupitz, Christopher ;
Metz, Markus ;
Nelson, Garrett ;
Xavier, Paulraj Lourdu ;
Beyerlein, Kenneth R. ;
Schmidt, Marius ;
Sarrou, Iosifina ;
Spence, John C. H. ;
Weierstall, Uwe ;
White, Thomas A. ;
Yang, Jay-How ;
Zhao, Yun ;
Liang, Mengning ;
Aquila, Andrew ;
Hunter, Mark S. ;
Robinson, Joseph S. ;
Koglin, Jason E. ;
Boutet, Sebastien ;
Fromme, Petra ;
Barty, Anton ;
Chapman, Henry N. .
NATURE, 2016, 530 (7589) :202-+
[8]   Perspectives for imaging single protein molecules with the present design of the European XFEL [J].
Ayyer, Kartik ;
Geloni, Gianluca ;
Kocharyan, Vitali ;
Saldin, Evgeni ;
Serkez, Svitozar ;
Yefanov, Oleksandr ;
Zagorodnov, Igor .
STRUCTURAL DYNAMICS-US, 2015, 2 (04)
[9]   Camera for coherent diffractive imaging and holography with a soft-x-ray free-electron laser [J].
Bajt, Sasa ;
Chapman, Henry N. ;
Spiller, Eberhard A. ;
Alameda, Jennifer B. ;
Woods, Bruce W. ;
Frank, Matthias ;
Bogan, Michael J. ;
Barty, Anton ;
Boutet, Sebastien ;
Marchesini, Stefano ;
Hau-Riege, Stefan P. ;
Hajdu, Janos ;
Shapiro, David .
APPLIED OPTICS, 2008, 47 (10) :1673-1683
[10]   De novo protein crystal structure determination from X-ray free-electron laser data [J].
Barends, Thomas R. M. ;
Foucar, Lutz ;
Botha, Sabine ;
Doak, R. Bruce ;
Shoeman, Robert L. ;
Nass, Karol ;
Koglin, Jason E. ;
Williams, Garth J. ;
Boutet, Sebastien ;
Messerschmidt, Marc ;
Schlichting, Ilme .
NATURE, 2014, 505 (7482) :244-+