Mechanism-based profiling of enzyme families

被引:466
作者
Evans, Michael J.
Cravatt, Benjamin F. [1 ]
机构
[1] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Dept Cell Biol, La Jolla, CA 92037 USA
关键词
D O I
10.1021/cr050288g
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The literature includes a number of studies expanding the technological scope and biological applications of activity-based protein profiling (ABPP). This review covers these advances and present their findings within the prevailing themes that have been served as the foundation for ABPP. Focus is on the explanation of ABP design to highlight how the structure and reactivity of these reagents influences their target portfolio and the scope of ABPP experiments. The review is presented into sections: (1) the design of ABPs for functional proteomics, (2) biological applications of ABPs, (3) methodological advances beyond the central paradigm and (4) ABPs and their application beyond comparative proteomics.
引用
收藏
页码:3279 / 3301
页数:23
相关论文
共 249 条
[1]   Mapping enzyme active sites in complex proteomes [J].
Adam, GC ;
Burbaum, J ;
Kozarich, JW ;
Patricelli, MP ;
Cravatt, BF .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (05) :1363-1368
[2]   (-)-FR182877 is a potent and selective inhibitor of carboxylesterase-1 [J].
Adam, GC ;
Vanderwal, CD ;
Sorensen, EJ ;
Cravatt, BF .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2003, 42 (44) :5480-5484
[3]   Trifunctional chemical probes for the consolidated detection and identification of enzyme activities from complex proteomes [J].
Adam, GC ;
Sorensen, EJ ;
Cravatt, BF .
MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (10) :828-835
[4]   Proteomic profiling of mechanistically distinct enzyme classes using a common chemotype [J].
Adam, GC ;
Sorensen, EJ ;
Cravatt, BF .
NATURE BIOTECHNOLOGY, 2002, 20 (08) :805-809
[5]   Profiling the specific reactivity of the proteome with non-directed activity-based probes [J].
Adam, GC ;
Cravatt, BF ;
Sorensen, EJ .
CHEMISTRY & BIOLOGY, 2001, 8 (01) :81-95
[6]   Chemical strategies for functional proteomics [J].
Adam, GC ;
Sorensen, EJ ;
Cravatt, BF .
MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (10) :781-790
[7]   A strain-promoted [3+2] azide-alkyne cycloaddition for covalent modification of biomolecules in living systems (vol 126, pg 15046, 2004) [J].
Agard, NJ ;
Prescher, JA ;
Bertozzi, CR .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (31) :11196-11196
[8]   Mechanism of carbamate inactivation of FAAH: Implications for the design of covalent inhibitors and in vivo functional probes for enzymes [J].
Alexander, JP ;
Cravatt, BF .
CHEMISTRY & BIOLOGY, 2005, 12 (11) :1179-1187
[9]   Mechanism and function of deubiquitinating enzymes [J].
Amerik, AY ;
Hochstrasser, M .
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH, 2004, 1695 (1-3) :189-207
[10]   Initiating cellular stress responses [J].
Bakkenist, CJ ;
Kastan, MB .
CELL, 2004, 118 (01) :9-17