Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-HgII-T Base Pairs**

被引:123
作者
Kondo, Jiro [1 ]
Yamada, Tom [1 ]
Hirose, Chika [1 ]
Okamoto, Itaru [2 ]
Tanaka, Yoshiyuki [3 ]
Ono, Akira [2 ]
机构
[1] Sophia Univ, Dept Mat & Life Sci, Fac Sci & Technol, Chiyoda Ku, Tokyo 1028554, Japan
[2] Kanagawa Univ, Dept Mat & Life Chem, Fac Engn, Yokohama, Kanagawa 2218686, Japan
[3] Tohoku Univ, Lab Mol Transformat, Grad Sch Pharmaceut Sci, Sendai, Miyagi 9808578, Japan
关键词
DNA; helical structures; mercury; metalation; structure elucidation; DOUBLE-STRANDED POLYNUCLEOTIDES; NUCLEIC-ACIDS; REVERSIBLE REACTION; ARTIFICIAL DNA; CROSS-LINKING; RNA DUPLEXES; B-DNA; MERCURY; BINDING; COMPLEXES;
D O I
10.1002/anie.201309066
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The metallo DNA duplex containing mercury-mediated T-T base pairs is an attractive biomacromolecular nanomaterial which can be applied to nanodevices such as ion sensors. Reported herein is the first crystal structure of a B-form DNA duplex containing two consecutive T-Hg-II-T base pairs. The Hg-II ion occupies the center between two T residues. The N3-Hg-II bond distance is 2.0 angstrom. The relatively short Hg-II-Hg-II distance (3.3 angstrom) observed in consecutive T-Hg-II-T base pairs suggests that the metallophilic attraction could exist between them and may stabilize the B-form double helix. To support this, the DNA duplex is largely distorted and adopts an unusual nonhelical conformation in the absence of Hg-II. The structure of the metallo DNA duplex itself and the Hg-II-induced structural switching from the nonhelical form to the B-form provide the basis for structure-based design of metal-conjugated nucleic acid nanomaterials.
引用
收藏
页码:2385 / 2388
页数:4
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