Crystal Structure of Metallo DNA Duplex Containing Consecutive Watson-Crick-like T-HgII-T Base Pairs**

被引:127
作者
Kondo, Jiro [1 ]
Yamada, Tom [1 ]
Hirose, Chika [1 ]
Okamoto, Itaru [2 ]
Tanaka, Yoshiyuki [3 ]
Ono, Akira [2 ]
机构
[1] Sophia Univ, Dept Mat & Life Sci, Fac Sci & Technol, Chiyoda Ku, Tokyo 1028554, Japan
[2] Kanagawa Univ, Dept Mat & Life Chem, Fac Engn, Yokohama, Kanagawa 2218686, Japan
[3] Tohoku Univ, Lab Mol Transformat, Grad Sch Pharmaceut Sci, Sendai, Miyagi 9808578, Japan
关键词
DNA; helical structures; mercury; metalation; structure elucidation; DOUBLE-STRANDED POLYNUCLEOTIDES; NUCLEIC-ACIDS; REVERSIBLE REACTION; ARTIFICIAL DNA; CROSS-LINKING; RNA DUPLEXES; B-DNA; MERCURY; BINDING; COMPLEXES;
D O I
10.1002/anie.201309066
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The metallo DNA duplex containing mercury-mediated T-T base pairs is an attractive biomacromolecular nanomaterial which can be applied to nanodevices such as ion sensors. Reported herein is the first crystal structure of a B-form DNA duplex containing two consecutive T-Hg-II-T base pairs. The Hg-II ion occupies the center between two T residues. The N3-Hg-II bond distance is 2.0 angstrom. The relatively short Hg-II-Hg-II distance (3.3 angstrom) observed in consecutive T-Hg-II-T base pairs suggests that the metallophilic attraction could exist between them and may stabilize the B-form double helix. To support this, the DNA duplex is largely distorted and adopts an unusual nonhelical conformation in the absence of Hg-II. The structure of the metallo DNA duplex itself and the Hg-II-induced structural switching from the nonhelical form to the B-form provide the basis for structure-based design of metal-conjugated nucleic acid nanomaterials.
引用
收藏
页码:2385 / 2388
页数:4
相关论文
共 60 条
[1]   Nucleic Acids as Therapeutic Agents [J].
Alvarez-Salas, Luis M. .
CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2008, 8 (15) :1379-1404
[2]  
[Anonymous], 2011, ANGEW CHEM
[3]  
[Anonymous], ANGEW CHEM
[4]  
[Anonymous], 2007, Angew. Chem.
[5]   Structure of a copper-mediated base pair in DNA [J].
Atwell, S ;
Meggers, E ;
Spraggon, G ;
Schultz, PG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2001, 123 (49) :12364-12367
[6]   Detection of Mercury-TpT Dinucleotide Binding by Raman Spectra: A Computational Study [J].
Benda, Ladislav ;
Straka, Michal ;
Sychrovsky, Vladimir ;
Bour, Petr ;
Tanaka, Yoshiyuki .
JOURNAL OF PHYSICAL CHEMISTRY A, 2012, 116 (32) :8313-8320
[7]   On the role of mercury in the non-covalent stabilisation of consecutive U-HgII-U metal-mediated nucleic acid base pairs: metallophilic attraction enters the world of nucleic acids [J].
Benda, Ladislav ;
Straka, Michal ;
Tanaka, Yoshiyuki ;
Sychrovsky, Vladimir .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2011, 13 (01) :100-103
[8]   Electrontransfer through DNA and metal-containing DNA [J].
Carell, T ;
Behrens, C ;
Gierlich, J .
ORGANIC & BIOMOLECULAR CHEMISTRY, 2003, 1 (13) :2221-2228
[9]   Crystal structure of a group I ribozyme domain: Principles of RNA packing [J].
Cate, JH ;
Gooding, AR ;
Podell, E ;
Zhou, KH ;
Golden, BL ;
Kundrot, CE ;
Cech, TR ;
Doudna, JA .
SCIENCE, 1996, 273 (5282) :1678-1685
[10]  
Clever G.H., 2010, Angew. Chem. Int. Ed, V122, P5047