Hymenobacter rivuli sp nov., isolated from a freshwater creek

被引:8
作者
Sheu, Shih-Yi [1 ]
Hsieh, Tsai-Ying [2 ]
Kwon, Soon-Wo [3 ]
Chen, Wen-Ming [2 ]
机构
[1] Natl Kaohsiung Marine Univ, Dept Marine Biotechnol, 142 Hai Chuan Rd, Kaohsiung 811, Taiwan
[2] Natl Kaohsiung Marine Univ, Dept Seafood Sci, Lab Microbiol, 142 Hai Chuan Rd, Kaohsiung 811, Taiwan
[3] Natl Acad Agr Sci, Natl Agrobiodivers Ctr, Suwon 441707, South Korea
关键词
freshwater creek; Cytophagaceae; Cytophagales; Cytophagia; Bacteroidetes; EMENDED DESCRIPTION; DEOXYRIBONUCLEIC-ACID; GENUS HYMENOBACTER; SANDSTONE; SEDIMENT; BACTERIA; DATABASE; CULTURE; FAMILY; POND;
D O I
10.1099/ijsem.0.002657
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A bright-red bacterial strain, TAPP3(T), was isolated from a freshwater sample taken from the Wanan Creek in Taiwan. Phylogenetic analyses based on 16S rRNA gene sequences revealed that TAPP3(T) represented a member of the genus Hymenobacter and showed the highest levels of sequence similarity to Hymenobacter ginsengisoli DCY57(T) (97.0 %) and Hymenobacter marinus KJ035(T) (96.5 %) and less than 96.2 % with other members of the genus. Cells of TAPP3(T) were Gram-stain-negative, aerobic, motile by gliding, rods that were surrounded by a thick capsule. Growth occurred at 20-35 degrees C (optimum, 25-30 degrees C), at pH 6.5-7.5 (optimum, pH 7) and with 0-1 % NaCl (optimum, 0 %). TAPP3(T) contained iso-C-15 : 0, summed feature 3 (C-16 : 1 omega 7c and/or C-16 : 1 omega 6c) and C-16 : 1 omega 5c as the predominant fatty acids. The major isoprenoid quinone was MK-7. The polar lipid profile consisted of phosphatidylethanolamine, six uncharacterized aminophospholipids and four uncharacterized lipids. The major polyamine was homospermidine. The DNA G+C content of the genomic DNA was 62.8 mol%. The DNA-DNA relatedness of TAPP3(T) with respect to Hymenobacter ginsengisoli DCY57(T) was less than 40 %. On the basis of the phylogenetic inference and phenotypic data, TAPP3(T) should be classified as representing a novel species, for which the name Hymenobacter rivuli sp. nov. is proposed. The type strain is TAPP3(T) (=BCRC 80979(T)=LMG 29559(T)=KCTC 52236(T)).
引用
收藏
页码:1220 / 1226
页数:7
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