SimpleDSFviewer: A tool to analyze and view differential scanning fluorimetry data for characterizing protein thermal stability and interactions
被引:24
作者:
Sun, Changye
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h-index: 0
机构:
Xinxiang Med Univ, Henan Key Lab Med Tissue Regenerat, Xinxiang 453003, Henan, Peoples R China
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool, Merseyside, EnglandXinxiang Med Univ, Henan Key Lab Med Tissue Regenerat, Xinxiang 453003, Henan, Peoples R China
Sun, Changye
[1
,2
]
Li, Yong
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h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool, Merseyside, EnglandXinxiang Med Univ, Henan Key Lab Med Tissue Regenerat, Xinxiang 453003, Henan, Peoples R China
Li, Yong
[2
]
Yates, Edwin A.
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h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool, Merseyside, EnglandXinxiang Med Univ, Henan Key Lab Med Tissue Regenerat, Xinxiang 453003, Henan, Peoples R China
Yates, Edwin A.
[2
]
Fernig, David G.
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h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool, Merseyside, EnglandXinxiang Med Univ, Henan Key Lab Med Tissue Regenerat, Xinxiang 453003, Henan, Peoples R China
Fernig, David G.
[2
]
机构:
[1] Xinxiang Med Univ, Henan Key Lab Med Tissue Regenerat, Xinxiang 453003, Henan, Peoples R China
data analysis;
differential scanning fluorimetry;
protein melting curve;
protein melting temperature;
PROMOTE;
D O I:
10.1002/pro.3703
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Differential scanning fluorimetry (DSF) is a widely used thermal shift assay for measuring protein stability and protein-ligand interactions that are simple, cheap, and amenable to high throughput. However, data analysis remains a challenge, requiring improved methods. Here, the program SimpleDSFviewer, a user-friendly interface, is described to help the researchers who apply DSF technique in their studies. SimpleDSFviewer integrates melting curve (MC) normalization, smoothing, and melting temperature (Tm) analysis and directly previews analyzed data, providing an efficient analysis tool for DSF. SimpleDSFviewer is developed in Matlab, and it is freely available for all users to use in Matlab workspace or with Matlab Runtime. It is easy to use and an efficient tool for researchers to preview and analyze their data in a very short time.
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Bailey, Fiona P.
Byrne, Dominic P.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Byrne, Dominic P.
Oruganty, Krishnadev
论文数: 0引用数: 0
h-index: 0
机构:
Univ Georgia, Inst Bioinformat, Athens, GA 30602 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Oruganty, Krishnadev
Eyers, Claire E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Eyers, Claire E.
Novotny, Christopher J.
论文数: 0引用数: 0
h-index: 0
机构:
UCSF, Dept Cellular & Mol Pharmacol, Howard Hughes Med Inst, San Francisco, CA 94158 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Novotny, Christopher J.
Shokat, Kevan M.
论文数: 0引用数: 0
h-index: 0
机构:
UCSF, Dept Cellular & Mol Pharmacol, Howard Hughes Med Inst, San Francisco, CA 94158 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Shokat, Kevan M.
Kannan, Natarajan
论文数: 0引用数: 0
h-index: 0
机构:
Univ Georgia, Inst Bioinformat, Athens, GA 30602 USA
Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Kannan, Natarajan
Eyers, Patrick A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
机构:
Univ Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, EnglandUniv Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, England
Niesen, Frank H.
Berglund, Helena
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Struct Genom Consortium, S-17177 Stockholm, SwedenUniv Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, England
Berglund, Helena
Vedadi, Masoud
论文数: 0引用数: 0
h-index: 0
机构:
Univ Toronto, Struct Genom Consortium, Toronto, ON M5G 1L5, CanadaUniv Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, England
机构:
Univ York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
Schulz, Michele N.
Landstroem, Jens
论文数: 0引用数: 0
h-index: 0
机构:
Univ York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
Landstroem, Jens
Hubbard, Roderick E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
Univ York, HYMS, York YO10 5DD, N Yorkshire, England
Vernalis R&D Ltd, Cambridge CB21 6GB, EnglandUniv York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Bailey, Fiona P.
Byrne, Dominic P.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Byrne, Dominic P.
Oruganty, Krishnadev
论文数: 0引用数: 0
h-index: 0
机构:
Univ Georgia, Inst Bioinformat, Athens, GA 30602 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Oruganty, Krishnadev
Eyers, Claire E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Eyers, Claire E.
Novotny, Christopher J.
论文数: 0引用数: 0
h-index: 0
机构:
UCSF, Dept Cellular & Mol Pharmacol, Howard Hughes Med Inst, San Francisco, CA 94158 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Novotny, Christopher J.
Shokat, Kevan M.
论文数: 0引用数: 0
h-index: 0
机构:
UCSF, Dept Cellular & Mol Pharmacol, Howard Hughes Med Inst, San Francisco, CA 94158 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Shokat, Kevan M.
Kannan, Natarajan
论文数: 0引用数: 0
h-index: 0
机构:
Univ Georgia, Inst Bioinformat, Athens, GA 30602 USA
Univ Georgia, Dept Biochem & Mol Biol, Athens, GA 30602 USAUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
Kannan, Natarajan
Eyers, Patrick A.
论文数: 0引用数: 0
h-index: 0
机构:
Univ Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, EnglandUniv Liverpool, Inst Integrat Biol, Dept Biochem, Liverpool L69 7ZB, Merseyside, England
机构:
Univ Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, EnglandUniv Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, England
Niesen, Frank H.
Berglund, Helena
论文数: 0引用数: 0
h-index: 0
机构:
Karolinska Inst, Struct Genom Consortium, S-17177 Stockholm, SwedenUniv Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, England
Berglund, Helena
Vedadi, Masoud
论文数: 0引用数: 0
h-index: 0
机构:
Univ Toronto, Struct Genom Consortium, Toronto, ON M5G 1L5, CanadaUniv Oxford, Botnar Res Ctr, Struct Genom Consortium, Oxford OX3 7LD, England
机构:
Univ York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
Schulz, Michele N.
Landstroem, Jens
论文数: 0引用数: 0
h-index: 0
机构:
Univ York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, EnglandUniv York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
Landstroem, Jens
Hubbard, Roderick E.
论文数: 0引用数: 0
h-index: 0
机构:
Univ York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England
Univ York, HYMS, York YO10 5DD, N Yorkshire, England
Vernalis R&D Ltd, Cambridge CB21 6GB, EnglandUniv York, Dept Chem, YSBL, York YO10 5DD, N Yorkshire, England