DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species

被引:40
作者
Alter, Svenja [1 ]
Bader, Kai C. [2 ]
Spannagl, Manuel [2 ]
Wang, Yu [1 ]
Bauer, Eva [1 ]
Schoen, Chris-Carolin [1 ]
Mayer, Klaus F. X. [2 ,3 ]
机构
[1] Tech Univ Munich, Ctr Life & Food Sci Weihenstephan, Plant Breeding, D-85354 Freising Weihenstephan, Germany
[2] German Res Ctr Environm Hlth, Helmholtz Ctr Munich, Dept Plant Genome & Syst Biol, D-85764 Neuherberg, Germany
[3] King Saud Univ, Coll Sci, Riyadh 11451, Saudi Arabia
来源
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2015年
关键词
SIGNAL-TRANSDUCTION; GENOME; ARABIDOPSIS; TOLERANCE; FARNESYLTRANSFERASE; DATABASE; SALT;
D O I
10.1093/database/bav046
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Plants are sessile and therefore exposed to a number of biotic and abiotic stresses. Drought is the major abiotic stress restricting plant growth worldwide. A number of genes involved in drought stress response have already been characterized, mainly in the model species Arabidopsis thaliana and Oryza sativa. However, with the aim to produce drought tolerant crop varieties, it is of importance to identify the respective orthologs for each species. We have developed DroughtDB, a manually curated compilation of molecularly characterized genes that are involved in drought stress response. DroughtDB includes information about the originally identified gene, its physiological and/or molecular function and mutant phenotypes and provides detailed information about computed orthologous genes in nine model and crop plant species including maize and barley. All identified orthologs are interlinked with the respective reference entry in MIPS/PGSB PlantsDB, which allows retrieval of additional information like genome context and sequence information. Thus, DroughtDB is a valuable resource and information tool for researchers working on drought stress and will facilitate the identification, analysis and characterization of genes involved in drought stress tolerance in agriculturally important crop plants.
引用
收藏
页数:7
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