A robust signature associated with patient prognosis and tumor immune microenvironment based on immune-related genes in lung squamous cell carcinoma

被引:9
作者
Zhou, Hao [1 ,2 ,3 ]
Zhang, Haijian [4 ]
Shi, Muqi [5 ]
Wang, Jinjie [1 ,2 ,3 ]
Huang, Zhanghao [1 ,2 ,3 ]
Shi, Jiahai [1 ,2 ,3 ]
机构
[1] Nantong Univ, Nantong Key Lab Translat Med Cardiothorac Dis, Affiliated Hosp, Nantong 226001, Jiangsu, Peoples R China
[2] Nantong Univ, Res Inst Translat Med Cardiothorac Dis, Affiliated Hosp, Nantong 226001, Jiangsu, Peoples R China
[3] Nantong Univ, Dept Thorac Surg, Affiliated Hosp, Nantong 226001, Jiangsu, Peoples R China
[4] Nantong Univ, Res Ctr Clin Med, Affiliated Hosp, Nantong 226001, Jiangsu, Peoples R China
[5] Nantong Univ, Med Coll, Nantong 226001, Jiangsu, Peoples R China
基金
中国国家自然科学基金;
关键词
Lung squamous cell carcinoma; Differentially expressed genes; Immune infiltration; Prognostic model; TCGA; EXPRESSION; RECEPTOR; GROWTH; NEUTROPHILS; PROGRESSION; SUBSETS; APELIN; PLAU;
D O I
10.1016/j.intimp.2020.106856
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
Background: Lung squamous cell carcinoma (LUSC) is one common type of lung cancer. Immune-related genes (IRGs) are closely associated with cancer prognosis. This study aims to screen the key genes associated with LUSC and establish an immune-related prognostic model. Methods: Based on the Cancer Genome Atlas (TCGA) database, we screened the differentially expressed genes (DEGs) between LUSC and normal samples. Intersecting the DEGs with the immune-related genes (IRGs), we obtained the differentially expressed IRGs (DEIRGs). Univariate as well as multivariate Cox regression analyses were performed to identify the survival-associated IRGs and establish an immune-related prognostic model. The relationship between the prognostic model and tumor-infiltrating immune cells was analyzed by TIMER and CIBERSORT. Results: A total of 229 DEIRGs were screened, and 14 IRGs associated with survival were identified using univariate Cox analysis. Among the 14 IRGs, six genes were selected out using Lasso and multivariate Cox analyses, and they were used to build the prognostic model. Further analysis indicated that overall survival (OS) of highrisk groups was lower than that of low-risk groups. High risk score was independently related to worse OS. Moreover, the risk score was positively correlated with several immune infiltration cells. Finally, the efficacy of the prognostic model was validated by another independent cohort GSE73403. Conclusion: The DEIRGs described in the study may have the potential to be the prognostic molecular markers for LUSC. In addition, the risk score model could predict the OS and provides more information for the immunotherapy of patients with LUSC.
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页数:10
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