Genomic Insight into Three Marine Micromonospora sp. Strains from the Gulf of California

被引：2
作者：
Contreras-Castro, Luis [1 ]
Maldonado, Luis A. [2 ]
Quintana, Erika T. [1 ]
Carro, Lorena [3 ,4 ]
Klenk, Hans-Peter [3 ]
机构：
[1] Inst Politecn Nacl, ENCB, Lab Bioprospecc Actinobacterias, Mexico City, DF, Mexico
[2] Univ Nacl Autonoma Mexico, Fac Quim, Mexico City, DF, Mexico
[3] Newcastle Univ, Sch Nat & Environm Sci, Newcastle Upon Tyne, Tyne & Wear, England
[4] Univ Salamanca, Dept Microbiol & Genet, Salamanca, Spain
来源：
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 28期
基金：
英国生物技术与生命科学研究理事会;
关键词：
SP NOV; SEA;
D O I：
10.1128/MRA.01673-18
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Three actinomycete strains, designated BL1, BL4, and CV4, were isolated from sediment samples from the Gulf of California in 2009 together with nearly 300 other actinobacteria. Genome mining and analysis of their similar to 6.4-Mb sequences confirmed the bioprospecting potential of these three bacteria belonging to the genus Micromonospora.
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页数：3
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共 24 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] Trimmomatic: a flexible trimmer for Illumina sequence data
    Bolger, Anthony M.
    Lohse, Marc
    Usadel, Bjoern
    [J]. BIOINFORMATICS, 2014, 30 (15) : 2114 - 2120
  • [3] Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
    Carro, Lorena
    Nouioui, Imen
    Sangal, Vartul
    Meier-Kolthoff, Jan P.
    Trujillo, Martha E.
    Montero-Calasanz, Maria del Carmen
    Sahin, Nevzat
    Smith, Darren Lee
    Kim, Kristi E.
    Peluso, Paul
    Deshpande, Shweta
    Woyke, Tanja
    Shapiro, Nicole
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    Goeker, Markus
    Goodfellow, Michael
    [J]. SCIENTIFIC REPORTS, 2018, 8
  • [4] Chun J, 2018, INT J SYST EVOL MICR, V68, P461, DOI [10.1099/ijsem.0.002516, 10.1099/ijsem.0.002532]
  • [5] Spider phylogenomics: untangling the Spider Tree of Life
    Garrison, Nicole L.
    Rodriguez, Juanita
    Agnarsson, Ingi
    Coddington, Jonathan A.
    Griswold, Charles E.
    Hamilton, Christopher A.
    Hedin, Marshal
    Kocot, Kevin M.
    Ledford, Joel M.
    Bond, Jason E.
    [J]. PEERJ, 2016, 4
  • [6] Genilloud O., 2015, Bergey's Manual of Systematics of Archaea and Bacteria, DOI [10.1002/9781118960608.gbm00148, DOI 10.1002/9781118960608.GBM00148]
  • [7] Micromonospora tulbaghiae sp nov., isolated from the leaves of wild garlic, Tulbaghia violacea
    Kirby, Bronwyn M.
    Meyers, Paul R.
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2010, 60 : 1328 - 1333
  • [8] Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton
    Kuncharoen, Nattakorn
    Kudo, Takuji
    Ohkuma, Moriya
    Tanasupawat, Somboon
    [J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY, 2019, 112 (02): : 253 - 262
  • [9] Fast and accurate short read alignment with Burrows-Wheeler transform
    Li, Heng
    Durbin, Richard
    [J]. BIOINFORMATICS, 2009, 25 (14) : 1754 - 1760
  • [10] Maldonado L.A., 2015, Advances in Microbiology, V5, P452
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