Solid-phase synthesis of base-sensitive oligonucleotides

被引:6
作者
Virta, Pasi [1 ]
机构
[1] Univ Turku, Dept Chem, FIN-20014 Turku, Finland
关键词
Base-sensitive oligonucleotides; orthogonal protections; N-unprotected methods; PROTECTING-GROUP; DNA-SYNTHESIS; PHOSPHORAMIDITE METHOD; AGLYCONE PROTECTION; AUTOMATED SYNTHESIS; EFFICIENT SYNTHESIS; SYNTHESIS SUPPORTS; ALLYL PROTECTION; FACILE SYNTHESIS; BUILDING-BLOCKS;
D O I
10.3998/ark.5550190.0010.307
中图分类号
O62 [有机化学];
学科分类号
070303 ; 081704 ;
摘要
Oligonucleotides bearing N-acylated and O-alkylated nucleobases, biodegradable phosphate protections, cap-structures, internucleotidic H-phosphonates, methylphosphates, O-methylphosphorothioates and phosphotriesters are sensitive to nucleophiles, nucleopeptides are prone to beta-elimination and some of the dihydropyrimidines undergo retro condensation. None of them withstand the standard ammonolytic deprotection, but an alternative synthetic procedure should be adopted. In this review, orthogonal protecting group schemes and the N-unprotected methods for the solid-phase synthesis of these important oligonucleotides are presented.
引用
收藏
页码:54 / 83
页数:30
相关论文
共 93 条
[1]   OXALYL-CPG - A LABILE SUPPORT FOR SYNTHESIS OF SENSITIVE OLIGONUCLEOTIDE DERIVATIVES [J].
ALUL, RH ;
SINGMAN, CN ;
ZHANG, GR ;
LETSINGER, RL .
NUCLEIC ACIDS RESEARCH, 1991, 19 (07) :1527-1532
[2]   Photocleavable protecting groups as nucleobase protections allowed the solid-phase synthesis of base-sensitive SATE-prooligonucleotides [J].
Alvarez, K ;
Vasseur, JJ ;
Beltran, T ;
Imbach, JL .
JOURNAL OF ORGANIC CHEMISTRY, 1999, 64 (17) :6319-6328
[3]   A comparative study of supports for the synthesis of oligonucleotides without using ammonia [J].
Avino, A ;
Garcia, RG ;
Diaz, A ;
Albericio, F ;
Eritja, R .
NUCLEOSIDES & NUCLEOTIDES, 1996, 15 (11-12) :1871-1889
[4]   INDEPENDENT GENERATION OF 5,6-DIHYDROTHYMID-5-YL IN SINGLE-STRANDED POLYTHYMIDYLATE - O-2 IS NECESSARY FOR STRAND SCISSION [J].
BARVIAN, MR ;
GREENBERG, MM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (31) :8291-8292
[5]   The synthesis of allyl- and allyloxycarbonyl-protected RNA posphoramidites. Useful reagents for solid-phase synthesis of RNAs with base-labile modifications. [J].
Bogdan, FM ;
Chow, CS .
TETRAHEDRON LETTERS, 1998, 39 (14) :1897-1900
[6]   A NEW BASE-STABLE LINKER FOR SOLID-PHASE OLIGONUCLEOTIDE SYNTHESIS [J].
BROWN, T ;
PRITCHARD, CE ;
TURNER, G ;
SALISBURY, SA .
JOURNAL OF THE CHEMICAL SOCIETY-CHEMICAL COMMUNICATIONS, 1989, (14) :891-893
[7]   SOLID-PHASE SYNTHESIS OF THE 5'-1/2 OF THE INITIATOR TRANSFER-RNA FROM B-SUBTILIS [J].
CHAIX, C ;
DUPLAA, AM ;
MOLKO, D ;
TEOULE, R .
NUCLEIC ACIDS RESEARCH, 1989, 17 (18) :7381-7393
[8]   Synthesis and deprotection of oligonucleotides under aprotic conditions [J].
Chen, TQ ;
Fu, JS ;
Greenberg, MM .
ORGANIC LETTERS, 2000, 2 (23) :3691-3694
[9]   Photolabile linker for the solid-phase synthesis of base-sensitive oligonucleotides [J].
DellAquila, C ;
Imbach, JL ;
Rayner, B .
TETRAHEDRON LETTERS, 1997, 38 (30) :5289-5292
[10]   SOLID-PHASE SYNTHESIS OF H-PHE-TYR-(PATAT)-NH2 - A NUCLEOPEPTIDE FRAGMENT FROM THE NUCLEOPROTEIN OF BACTERIOPHAGE-PHI-X174 [J].
DREEFTROMP, CM ;
VANDAM, EMA ;
VANDENELST, H ;
VANDERMAREL, GA ;
VANBOOM, JH .
NUCLEIC ACIDS RESEARCH, 1990, 18 (22) :6491-6495