Pseudomonas Aeruginosa bacteriophage SN: 3D-reconstruction of the capsid and identification of surface proteins by electron microscopy

被引:0
|
作者
Filchikov, M. V. [1 ]
Osmakov, D. I. [1 ]
Logovskaya, L. V. [1 ]
Sykilinda, N. N. [1 ]
Kadykov, V. A. [1 ]
Kurochkina, L. P. [1 ]
Mesyanzhinov, V. V. [1 ]
Bernal, R. A. [2 ]
Miroshnikov, K. A. [1 ]
机构
[1] Russian Acad Sci, MM Shemyakin YuA Ovchinnikov Inst Bioorgan Chem, Moscow 117997, Russia
[2] Univ Texas El Paso, Dept Chem, El Paso, TX 79968 USA
基金
俄罗斯基础研究基金会;
关键词
Pseudomonas aeruginosa; bacteriophage SN; proteomics; structural proteins; cryo-electron microscopy; 3D-reconstruction; immuno-electron microscopy; ANGSTROM RESOLUTION; CRYO-EM; PHI-KZ; TAIL; SHEATH; MECHANISM; EVOLUTION; VIRUSES; COMPLEX; SYSTEM;
D O I
10.1134/S1068162009060089
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The virulent Pseudomonas aeruginosa bacteriophage SN belongs to the PB1-like species of the Myoviridae family. The comparatively small (66,391 bp) DNA genome of this phage encodes 89 predicted open reading frames and the proteome involves more than 20 structural proteins. A 3D model of the phage capsid to approximately 18 resolution reveals certain peculiarities of capsomer structure typical of only this bacteriophage species. In the present work recombinant structural proteins SN gp22 and gp29 were expressed and purified; and specific polyclonal antibodies were obtained. Immuno-electron microscopy of purified phage SN using secondary gold-conjugated antibodies has revealed that gp29 forms a phage sheath, and gp22 decorates the capsid. Precise identification of multicopy major capsid proteins is essential for subsequent construction of gene-engineered phages bearing non-native peptides on their surfaces (phage display).
引用
收藏
页码:728 / 733
页数:6
相关论文
共 47 条
  • [21] Statistical methods for 3D reconstruction of viruses using cryo electron microscopy data
    Gao, W
    Doerschuk, PC
    BAYESIAN INFERENCE FOR INVERSE PROBLEMS, 1998, 3459 : 12 - 20
  • [22] Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging
    Janoos, Firdaus
    Mosaliganti, Kishore
    Xu, Xiaoyin
    Machiraju, Raghu
    Huang, Kun
    Wong, Stephen T. C.
    MEDICAL IMAGE ANALYSIS, 2009, 13 (01) : 167 - 179
  • [23] Properties of the new D3-like Pseudomonas aeruginosa bacteriophage phiPMG1: Genome structure and prospects for the use in phage therapy
    S. V. Krylov
    A. M. Kropinski
    E. A. Pleteneva
    O. V. Shaburova
    M. V. Burkal’tseva
    K. A. Mirosnnikov
    V. N. Krylov
    Russian Journal of Genetics, 2012, 48 : 902 - 911
  • [24] A vision-based, 3D reconstruction technique for scanning electron microscopy: Direct comparison with atomic force microscopy
    Raspanti, M
    Binaghi, E
    Gallo, I
    Manelli, A
    MICROSCOPY RESEARCH AND TECHNIQUE, 2005, 67 (01) : 1 - 7
  • [25] Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image Reconstruction
    Pittman, Nikea
    Misseldine, Adam
    Geilen, Lorena
    Halder, Sujata
    Smith, J. Kennon
    Kurian, Justin
    Chipman, Paul
    Janssen, Mandy
    Mckenna, Robert
    Baker, Timothy S.
    D'Abramo, Anthony, Jr.
    Cotmore, Susan
    Tattersall, Peter
    Agbandje-McKenna, Mavis
    VIRUSES-BASEL, 2017, 9 (11):
  • [26] A Coarse-grained Stream Architecture for Cryo-electron Microscopy Images 3D Reconstruction
    Wang, Wendi
    Duan, Bo
    Tang, Wen
    Zhang, Chunming
    Tan, Guangming
    Zhang, Peiheng
    Sun, Ninghui
    FPGA 12: PROCEEDINGS OF THE 2012 ACM-SIGDA INTERNATIONAL SYMPOSIUM ON FIELD PROGRAMMABLE GATE ARRAYS, 2012, : 143 - 152
  • [27] Determining the structure of biological macromolecules by transmission electron microscopy, single particle analysis and 3D reconstruction
    Ruprecht, J
    Nield, J
    PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2001, 75 (03) : 121 - 164
  • [28] Single-particle 3D Reconstruction from Cryo-Electron Microscopy Images on GPU
    Tan, Guangming
    Guo, Ziyu
    Chen, Mingyu
    Meng, Dan
    ICS'09: PROCEEDINGS OF THE 2009 ACM SIGARCH INTERNATIONAL CONFERENCE ON SUPERCOMPUTING, 2009, : 380 - 389
  • [29] 3D imaging and quantitative analysis of small solubilized membrane proteins and their complexes by transmission electron microscopy
    Vahedi-Faridi, Ardeschir
    Jastrzebska, Beata
    Palczewski, Krzysztof
    Engel, Andreas
    MICROSCOPY, 2013, 62 (01) : 95 - 107
  • [30] 3D SURFACE RECONSTRUCTION AND ANALYSIS IN AUTOMATED APPLE STEM-END/CALYX IDENTIFICATION
    Jiang, L.
    Zhu, B.
    Cheng, X.
    Luo, Y.
    Tao, Y.
    TRANSACTIONS OF THE ASABE, 2009, 52 (05) : 1775 - 1784