A current view on long noncoding RNAs in yeast and filamentous fungi

被引:40
作者
Till, Petra [1 ]
Mach, Robert L. [2 ]
Mach-Aigner, Astrid R. [1 ,2 ]
机构
[1] TU Wien, Inst Chem Environm & Biosci Engn, Christian Doppler Lab Optimized Express Carbohydr, Gumpendorfer Str 1a, A-1060 Vienna, Austria
[2] TU Wien, Inst Chem Environm & Biosci Engn, Gumpendorfer Str 1a, A-1060 Vienna, Austria
基金
奥地利科学基金会;
关键词
Long noncoding RNA; lncRNA; Yeast; Saccharomyces cerevisiae; Schizosaccharomyces pombe; Trichoderma reesei; REPEAT-CONTAINING RNA; SACCHAROMYCES-CEREVISIAE; FISSION YEAST; GENE-EXPRESSION; POLYMERASE-II; S; CEREVISIAE; TRANSCRIPTIONAL LANDSCAPE; ANTISENSE TRANSCRIPTION; SECONDARY STRUCTURE; HYPOCREA-JECORINA;
D O I
10.1007/s00253-018-9187-y
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Long noncoding RNAs (lncRNAs) are crucial players in epigenetic regulation. They were initially discovered in human, yet they emerged as common factors involved in a number of central cellular processes in several eukaryotes. For example, in the past decade, research on lncRNAs in yeast has steadily increased. Several examples of lncRNAs were described in Saccharomyces cerevisiae and Schizosaccharomyces pombe. Also, screenings for lncRNAs in ascomycetes were performed and, just recently, the first full characterization of a lncRNA was performed in the filamentous fungus Trichoderma reesei. In this review, we provide a broad overview about currently known fugal lncRNAs. We make an attempt to categorize them according to their functional context, regulatory strategies or special properties. Moreover, the potential of lncRNAs as a biotechnological tool is discussed.
引用
收藏
页码:7319 / 7331
页数:13
相关论文
共 90 条
[1]   Long non-coding RNA-mediated transcriptional interference of a permease gene confers drug tolerance in fission yeast [J].
Ard, Ryan ;
Tong, Pin ;
Allshire, Robin C. .
NATURE COMMUNICATIONS, 2014, 5
[2]   A cryptic unstable transcript mediates transcriptional trans-silencing of the Ty1 retrotransposon in S. cerevisiae [J].
Berretta, Julia ;
Pinskaya, Marina ;
Morillon, Antonin .
GENES & DEVELOPMENT, 2008, 22 (05) :615-626
[3]   Single-Cell Analysis Reveals that Noncoding RNAs Contribute to Clonal Heterogeneity by Modulating Transcription Factor Recruitment [J].
Bumgarner, Stacie L. ;
Neuert, Gregor ;
Voight, Benjamin F. ;
Symbor-Nagrabska, Anna ;
Grisafi, Paula ;
van Oudenaarden, Alexander ;
Fink, Gerald R. .
MOLECULAR CELL, 2012, 45 (04) :470-482
[4]   Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast [J].
Bumgarner, Stacie L. ;
Dowell, Robin D. ;
Grisafi, Paula ;
Gifford, David K. ;
Fink, Gerald R. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (43) :18321-18326
[5]   Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in s.: cerevisiae [J].
Camblong, Jurgi ;
Iglesias, Nahid ;
Fickentscher, Céline ;
Dieppois, Guennaelle ;
Stutz, Françoise .
CELL, 2007, 131 (04) :706-717
[6]   Trans-acting antisense RNAs mediate transcriptional gene cosuppression in S. cerevisiae [J].
Camblong, Jurgi ;
Beyrouthy, Nissrine ;
Guffanti, Elisa ;
Schlaepfer, Guillaume ;
Steinmetz, Lars M. ;
Stutz, Francoise .
GENES & DEVELOPMENT, 2009, 23 (13) :1534-1545
[7]   The transcriptional landscape of the mammalian genome [J].
Carninci, P ;
Kasukawa, T ;
Katayama, S ;
Gough, J ;
Frith, MC ;
Maeda, N ;
Oyama, R ;
Ravasi, T ;
Lenhard, B ;
Wells, C ;
Kodzius, R ;
Shimokawa, K ;
Bajic, VB ;
Brenner, SE ;
Batalov, S ;
Forrest, ARR ;
Zavolan, M ;
Davis, MJ ;
Wilming, LG ;
Aidinis, V ;
Allen, JE ;
Ambesi-Impiombato, X ;
Apweiler, R ;
Aturaliya, RN ;
Bailey, TL ;
Bansal, M ;
Baxter, L ;
Beisel, KW ;
Bersano, T ;
Bono, H ;
Chalk, AM ;
Chiu, KP ;
Choudhary, V ;
Christoffels, A ;
Clutterbuck, DR ;
Crowe, ML ;
Dalla, E ;
Dalrymple, BP ;
de Bono, B ;
Della Gatta, G ;
di Bernardo, D ;
Down, T ;
Engstrom, P ;
Fagiolini, M ;
Faulkner, G ;
Fletcher, CF ;
Fukushima, T ;
Furuno, M ;
Futaki, S ;
Gariboldi, M .
SCIENCE, 2005, 309 (5740) :1559-1563
[8]   The coding and noncoding transcriptome of Neurospora crassa [J].
Cemel, Ibrahim Avi ;
Ha, Nati ;
Schermann, Geza ;
Yonekawa, Shusuke ;
Brunner, Michael .
BMC GENOMICS, 2017, 18
[9]   Transcription of lncRNA prt, clustered prt RNA sites for Mmi1 binding, and RNA polymerase II CTD phospho-sites govern the repression of pho1 gene expression under phosphate-replete conditions in fission yeast [J].
Chatterjee, Debashree ;
Sanchez, Ana M. ;
Goldgur, Yehuda ;
Shuman, Stewart ;
Schwer, Beate .
RNA, 2016, 22 (07) :1011-1025
[10]   Telomeric repeat-containing RNA TERRA: a noncoding RNA connecting telomere biology to genome integrity [J].
Cusanelli, Emilio ;
Chartrand, Pascal .
FRONTIERS IN GENETICS, 2015, 6