Theoretical analysis of geometry and NMR isotope shift in hydrogen-bonding center of photoactive yellow protein by combination of multicomponent quantum mechanics and ONIOM scheme

被引：23

作者：

Kanematsu, Yusuke ^{[1
]}

Tachikawa, Masanori ^{[1
]}

机构：

[1] Yokohama City Univ, Quantum Chem Div, Kanazawa Ku, Yokohama, Kanagawa 2360027, Japan

来源：

JOURNAL OF CHEMICAL PHYSICS | 2014年 / 141卷 / 18期

关键词：

DENSITY-FUNCTIONAL THEORY; CHEMICAL-SHIFTS; PROTON-TRANSFER; SCHRODINGER-EQUATION; ACTIVE-SITE; SHIELDINGS; PARAMETERS; COMPLEXES; ELECTRONS; PATHWAYS;

D O I：

10.1063/1.4900987

中图分类号：

O64 [物理化学（理论化学）、化学物理学];

学科分类号：

070304 ; 081704 ;

摘要：

Multicomponent quantum mechanical (MC_QM) calculation has been extended with ONIOM (our own N-layered integrated molecular orbital + molecular mechanics) scheme [ONIOM(MC_QM:MM)] to take account of both the nuclear quantum effect and the surrounding environment effect. The authors have demonstrated the first implementation and application of ONIOM(MC_QM:MM) method for the analysis of the geometry and the isotope shift in hydrogen-bonding center of photoactive yellow protein. ONIOM(MC_QM:MM) calculation for a model with deprotonated Arg52 reproduced the elongation of O-H bond of Glu46 observed by neutron diffraction crystallography. Among the unique isotope shifts in different conditions, the model with protonated Arg52 with solvent effect reasonably provided the best agreement with the corresponding experimental values from liquid NMR measurement. Our results implied the availability of ONIOM(MC_QM:MM) to distinguish the local environment around hydrogen bonds in a biomolecule. (C) 2014 AIP Publishing LLC.

引用

页数：8