XL-MS: Protein cross-linking coupled with mass spectrometry

被引:80
作者
Holding, Andrew N. [1 ]
机构
[1] Univ Cambridge, Canc Res UK Cambridge Inst, Li Ka Shing Ctr, Cambridge CB2 0RE, England
基金
英国医学研究理事会;
关键词
Proteomics; Mass spectrometry; Structure; Quantitation; Systems biology; Cross-linking; XL-MS; LINKED PEPTIDES; RAPID IDENTIFICATION; SELECTIVE ENRICHMENT; STRUCTURAL-ANALYSIS; ACIDIC RESIDUES; PROTEOMICS; REAGENTS; PROBES; RNA; PURIFICATION;
D O I
10.1016/j.ymeth.2015.06.010
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
With the continuing trend to study larger and more complex systems, the application of protein cross-linking coupled with mass spectrometry (XL-MS) provides a varied toolkit perfectly suited to achieve these goals. By freezing the transient interactions through the formation of covalent bonds, XL-MS provides a vital insight into both the structure and organization of proteins in a wide variety of conditions. This review covers some of the established methods that underpin the field alongside the more recent developments that hold promise to further realize its potential in new directions. (C) 2015 The Author. Published by Elsevier Inc. This is an open access article under the CC BY license.
引用
收藏
页码:54 / 63
页数:10
相关论文
共 50 条
  • [31] Protein-protein cross-linking and human health: the challenge of elucidating with mass spectrometry
    Maes, Evelyne
    Dyer, Jolon M.
    McKerchar, Hannah J.
    Deb-Choudhury, Santanu
    Clerens, Stefan
    EXPERT REVIEW OF PROTEOMICS, 2017, 14 (10) : 917 - 929
  • [32] To Be or Not to Be? Five Guidelines to Avoid Misassignments in Cross-Linking/Mass Spectrometry
    Iacobucci, Claudio
    Sinz, Andrea
    ANALYTICAL CHEMISTRY, 2017, 89 (15) : 7832 - 7835
  • [33] Utility of formaldehyde cross-linking and mass spectrometry in the study of protein-protein interactions
    Sutherland, Brent W.
    Toews, Judy
    Kast, Juergen
    JOURNAL OF MASS SPECTROMETRY, 2008, 43 (06): : 699 - 715
  • [34] Evaluating protein interactions through cross-linking mass spectrometry
    Tabb, David L.
    NATURE METHODS, 2012, 9 (09) : 879 - 881
  • [35] Cross-linking/mass spectrometry at the crossroads
    Lolita Piersimoni
    Andrea Sinz
    Analytical and Bioanalytical Chemistry, 2020, 412 : 5981 - 5987
  • [36] Cross-linking/mass spectrometry at the crossroads
    Piersimoni, Lolita
    Sinz, Andrea
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2020, 412 (24) : 5981 - 5987
  • [37] Proteome-wide profiling of protein assemblies by cross-linking mass spectrometry
    Liu, Fan
    Rijkers, Dirk T. S.
    Post, Harm
    Heck, Albert J. R.
    NATURE METHODS, 2015, 12 (12) : 1179 - +
  • [38] Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing
    Seebacher, Jan
    Mallick, Parag
    Zhang, Ning
    Eddes, James S.
    Aebersold, Ruedi
    Gelb, Michael H.
    JOURNAL OF PROTEOME RESEARCH, 2006, 5 (09) : 2270 - 2282
  • [39] A New in Vivo Cross-linking Mass Spectrometry Platform to Define Protein-Protein Interactions in Living Cells
    Kaake, Robyn M.
    Wang, Xiaorong
    Burke, Anthony
    Yu, Clinton
    Kandur, Wynne
    Yang, Yingying
    Novtisky, Eric J.
    Second, Tonya
    Duan, Jicheng
    Kao, Athit
    Guan, Shenheng
    Vellucci, Danielle
    Rychnovsky, Scott D.
    Huang, Lan
    MOLECULAR & CELLULAR PROTEOMICS, 2014, 13 (12) : 3533 - 3543
  • [40] Complementary Benzophenone Cross-Linking/Mass Spectrometry Photochemistry
    Belsom, Adam
    Mudd, Gemma
    Giese, Sven
    Auer, Manfred
    Rappsilber, Juri
    ANALYTICAL CHEMISTRY, 2017, 89 (10) : 5319 - 5324