jPOSTrepo: an international standard data repository for proteomes

被引:483
作者
Okuda, Shujiro [1 ]
Watanabe, Yu [1 ]
Moriya, Yuki [2 ]
Kawano, Shin [2 ]
Yamamoto, Tadashi [3 ]
Matsumoto, Masaki [4 ]
Takami, Tomoyo [4 ]
Kobayashi, Daiki [5 ]
Araki, Norie [5 ]
Yoshizawa, Akiyasu C. [6 ]
Tabata, Tsuyoshi
Sugiyama, Naoyuki [7 ]
Goto, Susumu [6 ]
Ishihama, Yasushi [1 ,7 ]
机构
[1] Niigata Univ, Grad Sch Med & Dent Sci, Niigata 9518510, Japan
[2] Joint Support Ctr Data Sci Res, Database Ctr Life Sci, Res Org Informat & Syst, Kashiwa, Chiba 2770871, Japan
[3] Niigata Univ, Biofluid Biomarker Ctr, Inst Social Innovat & Cooperat, Niigata 9502181, Japan
[4] Kyushu Univ, Med Inst Bioregulat, Fukuoka 8128582, Japan
[5] Kumamoto Univ, Grad Sch Med Sci, Fac Life Sci, Kumamoto 8608556, Japan
[6] Kyoto Univ, Bioinformat Ctr, Inst Chem Res, Kyoto 6110011, Japan
[7] Kyoto Univ, Grad Sch Pharmaceut Sci, Kyoto 6068501, Japan
基金
日本科学技术振兴机构;
关键词
MASS; IDENTIFICATION; UPDATE;
D O I
10.1093/nar/gkw1080
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Major advancements have recently been made in mass spectrometry-based proteomics, yielding an increasing number of datasets from various proteomics projects worldwide. In order to facilitate the sharing and reuse of promising datasets, it is important to construct appropriate, high-quality public data repositories. jPOSTrepo (https://repository.jpostdb.org/) has successfully implemented several unique features, including high-speed file uploading, flexible file management and easy-to-use interfaces. This repository has been launched as a public repository containing various proteomic datasets and is available for researchers worldwide. In addition, our repository has joined the ProteomeXchange consortium, which includes the most popular public repositories such as PRIDE in Europe for MS/MS datasets and PASSEL for SRM datasets in the USA. Later MassIVE was introduced in the USA and accepted into the ProteomeXchange, as was our repository in July 2016, providing important datasets from Asia/Oceania. Accordingly, this repository thus contributes to a global alliance to share and store all datasets from a wide variety of proteomics experiments. Thus, the repository is expected to become a major repository, particularly for data collected in the Asia/Oceania region.
引用
收藏
页码:D1107 / D1111
页数:5
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