Placental microRNAs in pregnancies with early onset intrauterine growth restriction and preeclampsia: potential impact on gene expression and pathophysiology

被引:88
作者
Awamleh, Zain [1 ,2 ]
Gloor, Gregory B. [2 ]
Han, Victor K. M. [1 ,2 ]
机构
[1] Childrens Hlth Res Inst, 800 Commissioners Rd East, London, ON N6C 2V5, Canada
[2] Univ Western Ontario, Dept Biochem, London, ON N6A 3K7, Canada
基金
加拿大健康研究院;
关键词
Intrauterine growth restriction; MicroRNA; Next-generation sequencing; Placenta; Preeclampsia; DIAGNOSIS; MIR-210; PACKAGE;
D O I
10.1186/s12920-019-0548-x
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
BackgroundA normally developed placenta is integral to a successful pregnancy. Preeclampsia (PE) and intrauterine growth restriction (IUGR) are two common pregnancy related complications that maybe a result of abnormal placental development. Placental microRNAs (miRNAs) have been investigated as potential biomarkers for these complications, as they may play a role in placental development and pathophysiology by influencing gene expression. The purpose of this study is to utilize next-generation sequencing to determine miRNA and gene expression in human placental (chorionic villous) samples from three distinct patient groups with early-onset (EO) PE, IUGR, or PE+IUGR.MethodsPlacental tissues were collected from four patient groups (control [N=21], EO-PE [N=20], EO-IUGR [N=18], and EO-PE+IUGR [N=20]), and total RNA was used for miRNA and RNA sequencing on the Illumina Hiseq2000 platform. For stringent differential expression analysis multiple analysis programs were used to analyze both expression datasets in each patient group compared to gestational age-matched controls.ResultsAnalysis revealed miRNAs and genes that are disease-specific, as well as others that were common between disease groups, which suggests common underlying placental pathologies in EO-PE and EO-IUGR. More specifically, 6 miRNAs and 22 genes were identified to be differentially expressed in all three patient groups. In addition, integrative analysis between the miRNA and gene expression datasets revealed candidate gene targets for miRNAs of interest.ConclusionsIntegration of miRNA and RNA profiling in the same three subgroups of pregnancy complications, provides an alternate level of molecular information, in addition it can be used to better understand both unique and common molecular mechanisms involved in the pathophysiology of these diseases.
引用
收藏
页数:10
相关论文
共 51 条
[1]   Predicting effective microRNA target sites in mammalian mRNAs [J].
Agarwal, Vikram ;
Bell, George W. ;
Nam, Jin-Wu ;
Bartel, David P. .
ELIFE, 2015, 4
[2]   miR-210 Inhibits Trophoblast Invasion and Is a Serum Biomarker for Preedampsia [J].
Anton, Lauren ;
Olarerin-George, Anthony O. ;
Schwartz, Nadav ;
Srinivas, Sindhu ;
Bastek, Jamie ;
Hogenesch, John B. ;
Elovitz, Michal A. .
AMERICAN JOURNAL OF PATHOLOGY, 2013, 183 (05) :1437-1445
[3]   Consensus miRNA expression profiles derived from interplatform normalization of microarray data [J].
Bargaje, Rhishikesh ;
Hariharan, Manoj ;
Scaria, Vinod ;
Pillai, Beena .
RNA, 2010, 16 (01) :16-25
[4]   Identification of stably expressed reference small non-coding RNAs for microRNA quantification in high-grade serous ovarian carcinoma tissues [J].
Bignotti, Eliana ;
Calza, Stefano ;
Tassi, Renata A. ;
Zanotti, Laura ;
Bandiera, Elisabetta ;
Sartori, Enrico ;
Odicino, Franco E. ;
Ravaggi, Antonella ;
Todeschini, Paola ;
Romani, Chiara .
JOURNAL OF CELLULAR AND MOLECULAR MEDICINE, 2016, 20 (12) :2341-2348
[5]   Hypoxia enhances the expression of follistatin-like 3 in term human trophoblasts [J].
Biron-Shental, T. ;
Schaiff, W. T. ;
Rimon, E. ;
Shim, T. L. ;
Nelson, D. M. ;
Sadovsky, Y. .
PLACENTA, 2008, 29 (01) :51-57
[6]   Comparison of Normal and Pre-Eclamptic Placental Gene Expression: A Systematic Review with Meta-Analysis [J].
Brew, O. ;
Sullivan, M. H. F. ;
Woodman, A. .
PLOS ONE, 2016, 11 (08)
[7]   RNA-Seq differential expression analysis: An extended review and a software tool [J].
Costa-Silva, Juliana ;
Domingues, Douglas ;
Lopes, Fabricio Martins .
PLOS ONE, 2017, 12 (12)
[8]   Inhibin and activin production and subunit expression in human placental cells cultured in vitro [J].
Debieve, F ;
Pampfer, S ;
Thomas, K .
MOLECULAR HUMAN REPRODUCTION, 2000, 6 (08) :743-749
[9]   Differential placental gene expression in preeclampsia [J].
Enquobahrie, Daniel A. ;
Meller, Margaret ;
Rice, Kenneth ;
Psaty, Bruce M. ;
Siscovick, David S. ;
Williams, Michelle A. .
AMERICAN JOURNAL OF OBSTETRICS AND GYNECOLOGY, 2008, 199 (05) :566.e1-566.e11
[10]   ANOVA-Like Differential Expression (ALDEx) Analysis for Mixed Population RNA-Seq [J].
Fernandes, Andrew D. ;
Macklaim, Jean M. ;
Linn, Thomas G. ;
Reid, Gregor ;
Gloor, Gregory B. .
PLOS ONE, 2013, 8 (07)