Nocardioides palaemonis sp. nov. and Tessaracoccus palaemonis sp. nov., isolated from the gastrointestinal tract of lake prawn

被引:2
作者
Kim, Do-Yeon [1 ,2 ]
Jeong, In-Chul [1 ,2 ]
Lee, So-Yeon [1 ,2 ]
Jeong, Yun-Seok [1 ,2 ]
Han, Jeong Eun [1 ,2 ]
Tak, Euon Jung [1 ,3 ]
Lee, June -Young [1 ,3 ]
Kim, Pil Soo [1 ,3 ]
Hyun, Dong-Wook [1 ,2 ]
Bae, Jin- Woo [1 ,2 ,3 ]
机构
[1] Kyung Hee Univ, Dept Biol, Seoul 02447, South Korea
[2] Kyung Hee Univ, Dept Biomed & Pharmaceut Sci, Seoul 02447, South Korea
[3] Kyung Hee Univ, Dept Life & Nanopharmaceut Sci, Seoul 02447, South Korea
基金
新加坡国家研究基金会;
关键词
Actinomycetota; gut microbiota; lake prawn; novel species; Nocardioides; Nocardioides palaemonis; Tessaracoccus; Tessaracoccus palaemonis; GUT MICROBIOTA; ACTIVATED-SLUDGE; WHITE SHRIMP; GEN; NOV; BACTERIA; IDENTIFICATION; PERFORMANCE; SEQUENCES; EVOLUTION; GROWTH;
D O I
10.1099/ijsem.0.005643
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two novel Gram- stain-positive, non-motile and non- spore-forming bacterial strains, designated J2M5(T) and J1M15(T), were iso-lated from the gastrointestinal tract of a lake prawn Palaemon paucidens. Strain J2M5(T) was an obligately aerobic bacterium that formed milky-coloured colonies and showed a rod-coccus cell cycle, while strain J1M15(T) was a facultatively aerobic bacterium that formed orangish- yellow-coloured colonies and showed rod-shaped cells. Strains J2M5(T) and J1M15(T) showed the highest 16S rRNA gene sequence similarity to Nocardioides ganghwensis JC2055(T) (98.63 %) and Tessaracoccus flaves-cens SST-39T (98.08 %), respectively. The whole-genome sequence of strain J2M5(T) was 4.52 Mbp in size and the genomic G+C content directly calculated from the genome sequence of strain J2M5(T) was 72.5 mol%. The whole-genome sequence of strain J1M15(T) was 3.20 Mbp in size and the genomic G+C content directly calculated from the genome sequence of strain J1M15(T) was 69.6mol %. Strains J2M5(T) and J1M15(T) showed high OrthoANI similarity to N. ganghwensis JC2055(T) (83.6 %) and T. flaves-cens (77.2 %), respectively. We analysed the genome sequences of strains J2M5(T) and J1M15(T) in terms of carbohydrate-active enzymes, antibiotic resistance genes and virulence factor genes. Strains J2M5(T) and J1M15(T) contained MK -8 (H4) and MK -9 (H4) as the predominant respiratory quinones, respectively. The major polar lipids of both strains were phosphatidylglycerol and diphosphatidylglycerol. Additionally, strain J2M5(T) possessed phosphatidylcholine, phosphatidylserine and phosphatidy-lethanolamine. The cellular sugar components of strain J2M5(T) were ribose, mannose, glucose and galactose, and its cellular amino acid components were l-alanine and l -lysine. The cellular sugar components of strain J1M15(T) were rhamnose, ribose, mannose and glucose, and its cellular amino acid component was l-alanine. The major cellular fatty acids of strains J2M5(T) and J1M15(T) were iso- C16: 0 and anteiso-C15:0, respectively. The multiple taxonomic analyses indicated that strains J2M5(T) and J1M15(T) represent novel species of the genus Nocardioides and Tessaracoccus, respectively. We propose the names Nocardioides palae-monis sp. nov. and Tessaracoccus palaemonis sp. nov. for strain J2M5(T) (=KCTC 49461(T)=CCUG 74767(T)) and strain J1M15(T) (=KCTC 49462(T)=CCUG 74766(T)), respectively.
引用
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页数:14
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