ZNFX-1 Functions within Perinuclear Nuage to Balance Epigenetic Signals

被引:73
作者
Ishidate, Takao [1 ,3 ,5 ]
Ozturk, Ahmet R. [1 ,5 ]
Durning, Daniel J. [1 ]
Sharma, Rita [1 ,4 ]
Shen, En-zhi [1 ]
Chen, Hao [2 ]
Seth, Meetu [1 ]
Shirayama, Masaki [1 ,3 ]
Mello, Craig C. [1 ,3 ]
机构
[1] Univ Massachusetts, Med Sch, RNA Therapeut Inst, Worcester, MA 01605 USA
[2] Univ Massachusetts, Med Sch, Program Bioinformat & Integrat Biol, Worcester, MA 01605 USA
[3] Howard Hughes Med Inst, Worcester, MA 01605 USA
[4] Ohio Univ, Dept Biol Sci, Athens, OH 45701 USA
[5] Intellia Therapeut, Cambridge, MA 02139 USA
关键词
GERMLINE GENE-EXPRESSION; C. ELEGANS GERMLINE; CAENORHABDITIS-ELEGANS; RNA INTERFERENCE; P GRANULES; ARGONAUTE CSR-1; GENOME; PIRNAS; METHYLATION; FERTILITY;
D O I
10.1016/j.molcel.2018.04.009
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Animal cells have a remarkable capacity to adopt durable and heritable gene expression programs or epigenetic states that define the physical properties and diversity of somatic cell types. The maintenance of epigenetic programs depends on poorly understood pathways that prevent gain or loss of inherited signals. In the germline, epigenetic factors are enriched in liquid-like perinuclear condensates called nuage. Here, we identify the deeply conserved helicase-domain protein, ZNFX-1, as an epigenetic regulator and component of nuage that interacts with Argonaute systems to balance epigenetic inheritance. Our findings suggest that ZNFX-1 promotes the 3' recruitment of machinery that propagates the small RNA epigenetic signal and thus counteracts a tendency for Argonaute targeting to shift 5' along the mRNA. These functional insights support the idea that recently identified subdomains of nuage, including ZNFX-1 granules or "Z-granules,'' may define spatial and temporal zones of molecular activity during epigenetic regulation.
引用
收藏
页码:639 / +
页数:17
相关论文
共 48 条
[11]   The Argonaute CSR-1 and Its 22G-RNA Cofactors Are Required for Holocentric Chromosome Segregation [J].
Claycomb, Julie M. ;
Batista, Pedro J. ;
Pang, Ka Ming ;
Gu, Weifeng ;
Vasale, Jessica J. ;
van Wolfswinkel, Josien C. ;
Chaves, Daniel A. ;
Shirayama, Masaki ;
Mitani, Shohei ;
Ketting, Rene F. ;
Conte, Darryl, Jr. ;
Mello, Craig C. .
CELL, 2009, 139 (01) :123-134
[12]   Argonautes Promote Male Fertility and Provide a Paternal Memory of Germline Gene Expression in C. elegans [J].
Conine, Colin C. ;
Moresco, James J. ;
Gu, Weifeng ;
Shirayama, Masaki ;
Conte, Darryl, Jr. ;
Yates, John R., III ;
Mello, Craig C. .
CELL, 2013, 155 (07) :1532-1544
[13]   Potato virus X amplicons in arabidopsis mediate genetic and epigenetic gene silencing [J].
Dalmay, T ;
Hamilton, A ;
Mueller, E ;
Baulcombe, DC .
PLANT CELL, 2000, 12 (03) :369-379
[14]   Piwi and piRNAs act upstream of an endogenous siRNA pathway to suppress Tc3 transposon mobility in the Caenorhabditis elegans germline [J].
Das, Partha P. ;
Bagijn, Marloes P. ;
Goldstein, Leonard D. ;
Woolford, Julie R. ;
Lehrbach, Nicolas J. ;
Sapetschnig, Alexandra ;
Buhecha, Heeran R. ;
Gilchrist, Michael J. ;
Howe, Kevin L. ;
Stark, Rory ;
Matthewss, Nik ;
Berezilkov, Eugene ;
Ketting, Ren F. ;
Tavare, Simon ;
Miska, Eric A. .
MOLECULAR CELL, 2008, 31 (01) :79-90
[15]  
Duchaine TF, 2006, CELL, V124, P343, DOI [10.1016/j.cell.2005.11.036, 10.1016/j.cel.2005.11.036]
[16]   Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint [J].
Gu, Sam Guoping ;
Pak, Julia ;
Guang, Shouhong ;
Maniar, Jay M. ;
Kennedy, Scott ;
Fire, Andrew .
NATURE GENETICS, 2012, 44 (02) :157-164
[17]   CapSeq and CIP-TAP Identify Pol II Start Sites and Reveal Capped Small RNAs as C. elegans piRNA Precursors [J].
Gu, Weifeng ;
Lee, Heng-Chi ;
Chaves, Daniel ;
Youngman, Elaine M. ;
Pazour, Gregory J. ;
Conte, Darryl, Jr. ;
Mello, Craig C. .
CELL, 2012, 151 (07) :1488-1500
[18]   Distinct Argonaute-Mediated 22G-RNA Pathways Direct Genome Surveillance in the C. elegans Germline [J].
Gu, Weifeng ;
Shirayama, Masaki ;
Conte, Darryl, Jr. ;
Vasale, Jessica ;
Batista, Pedro J. ;
Claycomb, Julie M. ;
Moresco, James J. ;
Youngman, Elaine M. ;
Keys, Jennifer ;
Stoltz, Matthew J. ;
Chen, Chun-Chieh G. ;
Chaves, Daniel A. ;
Duan, Shenghua ;
Kasschau, Kristin D. ;
Fahlgren, Noah ;
Yates, John R., III ;
Mitani, Shohei ;
Carrington, James C. ;
Mello, Craig C. .
MOLECULAR CELL, 2009, 36 (02) :231-244
[19]   An Argonaute transports siRNAs from the cytoplasm to the nucleus [J].
Guang, Shouhong ;
Bochner, Aaron F. ;
Pavelec, Derek M. ;
Burkhart, Kirk B. ;
Harding, Sandra ;
Lachowiec, Jennifer ;
Kennedy, Scott .
SCIENCE, 2008, 321 (5888) :537-541
[20]   Small regulatory RNAs inhibit RNA polymerase II during the elongation phase of transcription [J].
Guang, Shouhong ;
Bochner, Aaron F. ;
Burkhart, Kirk B. ;
Burton, Nick ;
Pavelec, Derek M. ;
Kennedy, Scott .
NATURE, 2010, 465 (7301) :1097-U165