Implications of new proteomics strategies for biology and medicine

被引:55
作者
Domon, B [1 ]
Broder, S [1 ]
机构
[1] Celera Genom, Rockville, MD 20850 USA
关键词
structural proteomics; functional proteomics; quantitative proteomics; mass spectrometry; medicine; oncology;
D O I
10.1021/pr034082c
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Advances in proteomics have fundamentally changed the paradigm of discovery for drug targets and novel biomarkers. Proteomics methodologies currently used will be reviewed in this paper, including structural proteomics, quantitative proteomics, and functional proteomics. A strategy to identify differentially expressed cell surface proteins as monoclonal therapeutic targets in oncology will be discussed.
引用
收藏
页码:253 / 260
页数:8
相关论文
共 23 条
[1]   Chemical strategies for functional proteomics [J].
Adam, GC ;
Sorensen, EJ ;
Cravatt, BF .
MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (10) :781-790
[2]   Mass spectrometry in proteomics [J].
Aebersold, R ;
Goodlett, DR .
CHEMICAL REVIEWS, 2001, 101 (02) :269-295
[3]   Epitope mapping of a monoclonal antibody against human thrombin by R/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein [J].
Baerga-Ortiz, A ;
Hughes, CA ;
Mandell, JG ;
Komives, EA .
PROTEIN SCIENCE, 2002, 11 (06) :1300-1308
[4]  
Dwek MV, 2001, PROTEOMICS, V1, P756
[5]   ELECTROSPRAY IONIZATION FOR MASS-SPECTROMETRY OF LARGE BIOMOLECULES [J].
FENN, JB ;
MANN, M ;
MENG, CK ;
WONG, SF ;
WHITEHOUSE, CM .
SCIENCE, 1989, 246 (4926) :64-71
[6]   Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae [J].
Ficarro, SB ;
McCleland, ML ;
Stukenberg, PT ;
Burke, DJ ;
Ross, MM ;
Shabanowitz, J ;
Hunt, DF ;
White, FM .
NATURE BIOTECHNOLOGY, 2002, 20 (03) :301-305
[7]   Advances in quantitative proteomics using stable isotope tags [J].
Flory, MR ;
Griffin, TJ ;
Martin, D ;
Aebersold, R .
TRENDS IN BIOTECHNOLOGY, 2002, 20 (12) :S23-S29
[8]   Functional organization of the yeast proteome by systematic analysis of protein complexes [J].
Gavin, AC ;
Bösche, M ;
Krause, R ;
Grandi, P ;
Marzioch, M ;
Bauer, A ;
Schultz, J ;
Rick, JM ;
Michon, AM ;
Cruciat, CM ;
Remor, M ;
Höfert, C ;
Schelder, M ;
Brajenovic, M ;
Ruffner, H ;
Merino, A ;
Klein, K ;
Hudak, M ;
Dickson, D ;
Rudi, T ;
Gnau, V ;
Bauch, A ;
Bastuck, S ;
Huhse, B ;
Leutwein, C ;
Heurtier, MA ;
Copley, RR ;
Edelmann, A ;
Querfurth, E ;
Rybin, V ;
Drewes, G ;
Raida, M ;
Bouwmeester, T ;
Bork, P ;
Seraphin, B ;
Kuster, B ;
Neubauer, G ;
Superti-Furga, G .
NATURE, 2002, 415 (6868) :141-147
[9]   Quantitative analysis of complex protein mixtures using isotope-coded affinity tags [J].
Gygi, SP ;
Rist, B ;
Gerber, SA ;
Turecek, F ;
Gelb, MH ;
Aebersold, R .
NATURE BIOTECHNOLOGY, 1999, 17 (10) :994-999
[10]   IDENTIFYING PROTEINS FROM 2-DIMENSIONAL GELS BY MOLECULAR MASS SEARCHING OF PEPTIDE-FRAGMENTS IN PROTEIN-SEQUENCE DATABASES [J].
HENZEL, WJ ;
BILLECI, TM ;
STULTS, JT ;
WONG, SC ;
GRIMLEY, C ;
WATANABE, C .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (11) :5011-5015