The druggable genome and support for target identification and validation in drug development

被引:552
作者
Finan, Chris [1 ,2 ]
Gaulton, Anna [3 ]
Kruger, Felix A. [1 ,4 ]
Lumbers, R. Thomas [1 ,2 ]
Shah, Tina [1 ,2 ]
Engmann, Jorgen [1 ,2 ]
Galver, Luana [5 ]
Kelley, Ryan [5 ]
Karlsson, Anneli [3 ]
Santos, Rita [3 ,6 ]
Overington, John P. [3 ,4 ]
Hingorani, Aroon D. [1 ,2 ]
Casas, Juan P. [2 ]
机构
[1] UCL, Fac Populat Hlth, Inst Cardiovasc Sci, London WC1E 6BT, England
[2] UCL, Farr Inst Hlth Informat, London WC1E 6BT, England
[3] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England
[4] BenevolentAI, 40 Churchway, London, England
[5] Illumina Inc, 5200 Illumina Way, San Diego, CA 92122 USA
[6] GlaxoSmithKline Med Res Ctr, Gunnels Wood Rd, Stevenage SG1 2NY, Herts, England
基金
英国惠康基金;
关键词
CORONARY-HEART-DISEASE; WIDE ASSOCIATION; MENDELIAN RANDOMIZATION; DATABASE; ONTOLOGY; LOCI; TOOL; UNIFICATION; PIPELINE; LESSONS;
D O I
10.1126/scitranslmed.aag1166
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Target identification (determining the correct drug targets for a disease) and target validation (demonstrating an effect of target perturbation on disease biomarkers and disease end points) are important steps in drug development. Clinically relevant associations of variants in genes encoding drug targets model the effect of modifying the same targets pharmacologically. To delineate drug development (including repurposing) opportunities arising fromthis paradigm, we connected complex disease-and biomarker-associated loci from genome-wide association studies to an updated set of genes encoding druggable human proteins, to agents with bioactivity against these targets, and, where there were licensed drugs, to clinical indications. We used this set of genes to inform the design of a new genotyping array, which will enable association studies of druggable genes for drug target selection and validation in human disease.
引用
收藏
页数:15
相关论文
共 71 条
[1]   The SAAP pipeline and database: tools to analyze the impact and predict the pathogenicity of mutations [J].
Al-Numair, Nouf S. ;
Martin, Andrew C. R. .
BMC GENOMICS, 2013, 14
[2]  
[Anonymous], DRUG DAT FDB 1 DAT
[3]  
[Anonymous], 2015, Nature, DOI [DOI 10.1038/NATURE15393, 10.1038/nature15393]
[4]   Phase II and Phase III attrition rates 2011-2012 [J].
Arrowsmith, John ;
Miller, Philip .
NATURE REVIEWS DRUG DISCOVERY, 2013, 12 (08) :568-568
[5]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[6]   Protein tyrosine phosphatases as drug targets: strategies and challenges of inhibitor development [J].
Barr, Alastair J. .
FUTURE MEDICINAL CHEMISTRY, 2010, 2 (10) :1563-1576
[7]  
Bateman A, 2002, NUCLEIC ACIDS RES, V30, P276, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
[8]   UniProt: a hub for protein information [J].
Bateman, Alex ;
Martin, Maria Jesus ;
O'Donovan, Claire ;
Magrane, Michele ;
Apweiler, Rolf ;
Alpi, Emanuele ;
Antunes, Ricardo ;
Arganiska, Joanna ;
Bely, Benoit ;
Bingley, Mark ;
Bonilla, Carlos ;
Britto, Ramona ;
Bursteinas, Borisas ;
Chavali, Gayatri ;
Cibrian-Uhalte, Elena ;
Da Silva, Alan ;
De Giorgi, Maurizio ;
Dogan, Tunca ;
Fazzini, Francesco ;
Gane, Paul ;
Cas-tro, Leyla Garcia ;
Garmiri, Penelope ;
Hatton-Ellis, Emma ;
Hieta, Reija ;
Huntley, Rachael ;
Legge, Duncan ;
Liu, Wudong ;
Luo, Jie ;
MacDougall, Alistair ;
Mutowo, Prudence ;
Nightin-gale, Andrew ;
Orchard, Sandra ;
Pichler, Klemens ;
Poggioli, Diego ;
Pundir, Sangya ;
Pureza, Luis ;
Qi, Guoying ;
Rosanoff, Steven ;
Saidi, Rabie ;
Sawford, Tony ;
Shypitsyna, Aleksandra ;
Turner, Edward ;
Volynkin, Vladimir ;
Wardell, Tony ;
Watkins, Xavier ;
Zellner, Hermann ;
Cowley, Andrew ;
Figueira, Luis ;
Li, Weizhong ;
McWilliam, Hamish .
NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) :D204-D212
[9]   The ChEMBL bioactivity database: an update [J].
Bento, A. Patricia ;
Gaulton, Anna ;
Hersey, Anne ;
Bellis, Louisa J. ;
Chambers, Jon ;
Davies, Mark ;
Krueger, Felix A. ;
Light, Yvonne ;
Mak, Lora ;
McGlinchey, Shaun ;
Nowotka, Michal ;
Papadatos, George ;
Santos, Rita ;
Overington, John P. .
NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) :D1083-D1090
[10]   The NIH Roadmap Epigenomics Mapping Consortium [J].
Bernstein, Bradley E. ;
Stamatoyannopoulos, John A. ;
Costello, Joseph F. ;
Ren, Bing ;
Milosavljevic, Aleksandar ;
Meissner, Alexander ;
Kellis, Manolis ;
Marra, Marco A. ;
Beaudet, Arthur L. ;
Ecker, Joseph R. ;
Farnham, Peggy J. ;
Hirst, Martin ;
Lander, Eric S. ;
Mikkelsen, Tarjei S. ;
Thomson, James A. .
NATURE BIOTECHNOLOGY, 2010, 28 (10) :1045-1048