The druggable genome and support for target identification and validation in drug development

被引:460
作者
Finan, Chris [1 ,2 ]
Gaulton, Anna [3 ]
Kruger, Felix A. [1 ,4 ]
Lumbers, R. Thomas [1 ,2 ]
Shah, Tina [1 ,2 ]
Engmann, Jorgen [1 ,2 ]
Galver, Luana [5 ]
Kelley, Ryan [5 ]
Karlsson, Anneli [3 ]
Santos, Rita [3 ,6 ]
Overington, John P. [3 ,4 ]
Hingorani, Aroon D. [1 ,2 ]
Casas, Juan P. [2 ]
机构
[1] UCL, Fac Populat Hlth, Inst Cardiovasc Sci, London WC1E 6BT, England
[2] UCL, Farr Inst Hlth Informat, London WC1E 6BT, England
[3] European Bioinformat Inst, European Mol Biol Lab, Wellcome Genome Campus, Cambridge CB10 1SD, England
[4] BenevolentAI, 40 Churchway, London, England
[5] Illumina Inc, 5200 Illumina Way, San Diego, CA 92122 USA
[6] GlaxoSmithKline Med Res Ctr, Gunnels Wood Rd, Stevenage SG1 2NY, Herts, England
基金
英国惠康基金;
关键词
CORONARY-HEART-DISEASE; WIDE ASSOCIATION; MENDELIAN RANDOMIZATION; DATABASE; ONTOLOGY; LOCI; TOOL; UNIFICATION; PIPELINE; LESSONS;
D O I
10.1126/scitranslmed.aag1166
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Target identification (determining the correct drug targets for a disease) and target validation (demonstrating an effect of target perturbation on disease biomarkers and disease end points) are important steps in drug development. Clinically relevant associations of variants in genes encoding drug targets model the effect of modifying the same targets pharmacologically. To delineate drug development (including repurposing) opportunities arising fromthis paradigm, we connected complex disease-and biomarker-associated loci from genome-wide association studies to an updated set of genes encoding druggable human proteins, to agents with bioactivity against these targets, and, where there were licensed drugs, to clinical indications. We used this set of genes to inform the design of a new genotyping array, which will enable association studies of druggable genes for drug target selection and validation in human disease.
引用
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页数:15
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共 71 条
  • [1] The SAAP pipeline and database: tools to analyze the impact and predict the pathogenicity of mutations
    Al-Numair, Nouf S.
    Martin, Andrew C. R.
    [J]. BMC GENOMICS, 2013, 14
  • [2] [Anonymous], DRUG DAT FDB 1 DAT
  • [3] [Anonymous], 2015, Nature, DOI [DOI 10.1038/NATURE15393, 10.1038/nature15393]
  • [4] Phase II and Phase III attrition rates 2011-2012
    Arrowsmith, John
    Miller, Philip
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2013, 12 (08) : 568 - 568
  • [5] Gene Ontology: tool for the unification of biology
    Ashburner, M
    Ball, CA
    Blake, JA
    Botstein, D
    Butler, H
    Cherry, JM
    Davis, AP
    Dolinski, K
    Dwight, SS
    Eppig, JT
    Harris, MA
    Hill, DP
    Issel-Tarver, L
    Kasarskis, A
    Lewis, S
    Matese, JC
    Richardson, JE
    Ringwald, M
    Rubin, GM
    Sherlock, G
    [J]. NATURE GENETICS, 2000, 25 (01) : 25 - 29
  • [6] Protein tyrosine phosphatases as drug targets: strategies and challenges of inhibitor development
    Barr, Alastair J.
    [J]. FUTURE MEDICINAL CHEMISTRY, 2010, 2 (10) : 1563 - 1576
  • [7] Bateman A, 2002, NUCLEIC ACIDS RES, V30, P276, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
  • [8] UniProt: a hub for protein information
    Bateman, Alex
    Martin, Maria Jesus
    O'Donovan, Claire
    Magrane, Michele
    Apweiler, Rolf
    Alpi, Emanuele
    Antunes, Ricardo
    Arganiska, Joanna
    Bely, Benoit
    Bingley, Mark
    Bonilla, Carlos
    Britto, Ramona
    Bursteinas, Borisas
    Chavali, Gayatri
    Cibrian-Uhalte, Elena
    Da Silva, Alan
    De Giorgi, Maurizio
    Dogan, Tunca
    Fazzini, Francesco
    Gane, Paul
    Cas-tro, Leyla Garcia
    Garmiri, Penelope
    Hatton-Ellis, Emma
    Hieta, Reija
    Huntley, Rachael
    Legge, Duncan
    Liu, Wudong
    Luo, Jie
    MacDougall, Alistair
    Mutowo, Prudence
    Nightin-gale, Andrew
    Orchard, Sandra
    Pichler, Klemens
    Poggioli, Diego
    Pundir, Sangya
    Pureza, Luis
    Qi, Guoying
    Rosanoff, Steven
    Saidi, Rabie
    Sawford, Tony
    Shypitsyna, Aleksandra
    Turner, Edward
    Volynkin, Vladimir
    Wardell, Tony
    Watkins, Xavier
    Zellner, Hermann
    Cowley, Andrew
    Figueira, Luis
    Li, Weizhong
    McWilliam, Hamish
    [J]. NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) : D204 - D212
  • [9] The ChEMBL bioactivity database: an update
    Bento, A. Patricia
    Gaulton, Anna
    Hersey, Anne
    Bellis, Louisa J.
    Chambers, Jon
    Davies, Mark
    Krueger, Felix A.
    Light, Yvonne
    Mak, Lora
    McGlinchey, Shaun
    Nowotka, Michal
    Papadatos, George
    Santos, Rita
    Overington, John P.
    [J]. NUCLEIC ACIDS RESEARCH, 2014, 42 (D1) : D1083 - D1090
  • [10] The NIH Roadmap Epigenomics Mapping Consortium
    Bernstein, Bradley E.
    Stamatoyannopoulos, John A.
    Costello, Joseph F.
    Ren, Bing
    Milosavljevic, Aleksandar
    Meissner, Alexander
    Kellis, Manolis
    Marra, Marco A.
    Beaudet, Arthur L.
    Ecker, Joseph R.
    Farnham, Peggy J.
    Hirst, Martin
    Lander, Eric S.
    Mikkelsen, Tarjei S.
    Thomson, James A.
    [J]. NATURE BIOTECHNOLOGY, 2010, 28 (10) : 1045 - 1048