Periodic oscillation in delayed gene networks with SUM regulatory logic and small perturbations

被引:31
作者
Wang, Yi [2 ,4 ]
Ma, Zhongjun [3 ]
Shen, Jianwei [2 ]
Liu, Zengrong [1 ]
Chen, Luonan [1 ]
机构
[1] Shanghai Univ, Inst Syst Biol, Shanghai 200444, Peoples R China
[2] Shanghai Univ, Coll Sci, Shanghai 200444, Peoples R China
[3] Cent S Univ, Sch Math Sci & Comp Technol, Changsha 410083, Peoples R China
[4] Zhejiang Univ Finance & Econ, Hangzhou 310012, Peoples R China
基金
美国国家科学基金会;
关键词
Gene network; Periodic oscillation; Distributed delay; EXPRESSION; STABILITY; NOISE; LOCALIZATION;
D O I
10.1016/j.mbs.2009.03.010
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this paper, we derive new criteria for evaluating the global stability of periodic oscillation in delayed gene networks with SUM regulatory logic and small perturbation, which appear in many biological systems at biomolecular or cellular levels due to the weak coupling and signal diffusion (or transport) process. Our results rely on the Lipschtiz conditions of Hill function, topology of gene networks and delay kernels. In particular, Our method based on the proposed model transforms the original network into matrix analysis problem, thereby not only significantly reducing the computational complexity but also making analysis of periodic oscillation tractable for even large-scale nonlinear networks. (C) 2009 Elsevier Inc. All rights reserved.
引用
收藏
页码:34 / 44
页数:11
相关论文
共 39 条
[1]   Network motifs: theory and experimental approaches [J].
Alon, Uri .
NATURE REVIEWS GENETICS, 2007, 8 (06) :450-461
[2]  
[Anonymous], 1979, NONNEGATIVE MATRICES
[3]  
[Anonymous], 1977, COINCIDENCE DEGREE N, DOI DOI 10.1007/BFB0089537
[4]   Noise in eukaryotic gene expression [J].
Blake, WJ ;
Kærn, M ;
Cantor, CR ;
Collins, JJ .
NATURE, 2003, 422 (6932) :633-637
[5]   Delay-induced stochastic oscillations in gene regulation [J].
Bratsun, D ;
Volfson, D ;
Tsimring, LS ;
Hasty, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (41) :14593-14598
[6]   On schemes of combinatorial transcription logic [J].
Buchler, NE ;
Gerland, U ;
Hwa, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (09) :5136-5141
[7]  
Burton T. A., 1985, Stability and Periodic Solutions of Ordinary and Functional Differential Equations
[8]  
CHEN J, 2001, SPECIAL MATRICES, P277
[9]   Stability of genetic regulatory networks with time delay [J].
Chen, LN ;
Aihara, K .
IEEE TRANSACTIONS ON CIRCUITS AND SYSTEMS I-REGULAR PAPERS, 2002, 49 (05) :602-608
[10]   Transcriptional dynamics of the embryonic stem cell switch [J].
Chickarmane, Vijay ;
Troein, Carl ;
Nuber, Ulrike A. ;
Sauro, Herbert M. ;
Peterson, Carsten .
PLOS COMPUTATIONAL BIOLOGY, 2006, 2 (09) :1080-1092