Non-Enzymatic Template-Directed Recombination of RNAs

被引:9
作者
Nechaev, Sergey Y. [1 ]
Lutay, Alexei V. [1 ]
Vlassov, Valentin V. [1 ]
Zenkova, Marina A. [1 ]
机构
[1] Russian Acad Sci, Siberian Branch, Inst Chem Biol & Fundamental Med, Novosibirsk 630090, Russia
来源
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES | 2009年 / 10卷 / 04期
关键词
RNA; non-enzymatic recombination; non-enzymatic ligation; RNA bulge loops; RNA internal loops; RNA world; origin of life; ARTIFICIAL RIBONUCLEASE; SECONDARY STRUCTURE; CLEAVAGE; OLIGONUCLEOTIDES; WORLD; ACID; MONTMORILLONITE; HYBRIDIZATION; STABILITY; MECHANISM;
D O I
10.3390/ijms10041788
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
RNA non-enzymatic recombination reactions are of great interest within the hypothesis of the "RNA world", which argues that at some stage of prebiotic life development proteins were not yet engaged in biochemical reactions and RNA carried out both the information storage task and the full range of catalytic roles necessary in primitive self-replicating systems. Here we report on the study of recombination reaction occuring between two 96 nucleotides (nts) fragments of RNAs under physiological conditions and governed by a short oligodeoxyribonucleotide template, partially complementary to sequences within each of the RNAs. Analysis of recombination products shows that ligation is predominantly template-directed, and occurs within the complementary complex with the template in "butt-to-butt" manner, in 1- or 3- nts bulges or in 2-3 nts internal loops. Minor recombination products formed in the template-independent manner are detected as well.
引用
收藏
页码:1788 / 1807
页数:20
相关论文
共 32 条
  • [1] A common speed limit for RNA-cleaving ribozymes and deoxyribozymes
    Breaker, RR
    Emilsson, GM
    Lazarev, D
    Nakamura, S
    Puskarz, IJ
    Roth, A
    Sudarsan, N
    [J]. RNA, 2003, 9 (08) : 949 - 957
  • [2] Thermodynamic examination of trinucleotide bulged RNA in the context of HIV-1 TAR RNA
    Carter-O'Connell, Ian
    Booth, David
    Eason, Bryan
    Grover, Neena
    [J]. RNA, 2008, 14 (12) : 2550 - 2556
  • [3] Nonhomologous RNA recombination in a cell-free system: Evidence for a transesterification mechanism guided by secondary structure
    Chetverin, AB
    Chetverina, HV
    Demidenko, AA
    Ugarov, VI
    [J]. CELL, 1997, 88 (04) : 503 - 513
  • [4] Spontaneous rearrangements in RNA sequences
    Chetverina, HV
    Demidenko, AA
    Ugarov, VI
    Chetverin, AB
    [J]. FEBS LETTERS, 1999, 450 (1-2): : 89 - 94
  • [5] Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs
    Ciesiolka, J
    Michalowski, D
    Wrzesinski, J
    Krajewski, J
    Krzyzosiak, WJ
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1998, 275 (02) : 211 - 220
  • [6] Ribozyme speed limits
    Emilsson, GM
    Nakamura, S
    Roth, A
    Breaker, RR
    [J]. RNA, 2003, 9 (08) : 907 - 918
  • [7] Sequence- and regio-selectivity in the montmorillonite-catalyzed synthesis of RNA
    Ertem, G
    Ferris, JP
    [J]. ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE, 2000, 30 (05): : 411 - 422
  • [8] Formation of RNA oligomers on montmorillonite: Site of catalysis
    Ertem, G
    Ferris, JP
    [J]. ORIGINS OF LIFE AND EVOLUTION OF THE BIOSPHERE, 1998, 28 (4-6): : 485 - 499
  • [9] ORIGIN OF LIFE - THE RNA WORLD
    GILBERT, W
    [J]. NATURE, 1986, 319 (6055) : 618 - 618
  • [10] FREE-ENERGY OF IMPERFECT NUCLEIC-ACID HELICES .3. SMALL INTERNAL LOOPS RESULTING FROM MISMATCHES
    GRALLA, J
    CROTHERS, DM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1973, 78 (02) : 301 - &