Background The diagnosis of myocarditis presenting as isolated acute chest pain with elevated troponins but normal systolic function is challenging with significant drawbacks even for the gold-standard endomyocardial biopsy. Objective This study aimed to evaluate the diagnostic role of strain imaging by echocardiography and cardiac MRI in these patients. Materials and methods This was a retrospective review of children with cardiac MRI for acute chest pain with elevated troponins compared to normal controls. Echocardiographic fractional shortening, ejection fraction, speckle-tracking-derived peak longitudinal, radial, and circumferential strain were compared to cardiac MRI ejection fraction, T2 imaging, late gadolinium enhancement, speckle-tracking-derived peak longitudinal strain, radial strain, and circumferential strain. Results Group 1 included 10 subjects diagnosed with myocarditis, 9 (90%) males with a median age of 15.5 years (range: 14-17 years) compared with 10 age-matched controls in group 2. All subjects in group 1 had late gadolinium enhancement consistent with myocarditis and troponin ranged from 2.5 to >30 ng/ml. Electrocardiogram changes included ST segment elevation in 6 and abnormal Q waves in 1. Qualitative echocardiographic function was normal in both groups and mean fractional shortening was similar (35 +/- 6% in group 1 vs. 34 +/- 4% in group 2, P=0.70). Left ventricle ejection fraction by cardiac MRI, however, was lower in group 1 (52 +/- 9%) compared to group 2 at (59 +/- 4%) (P=0.03). Cardiac MRI derived strain was lower in group 1 vs. group 2 for speckle-tracking-derived peak longitudinal strain (-12.8 +/- 2.8% vs. -17.1 +/- 1.5%, P=0.001), circumferential strain (-12.3 +/- 3.8% vs. -15.8 +/- 1.2%, P=0.020) and radial strain (13.6 +/- 3.7% vs. 17.2 +/- 3.2%, P=0.040). Echocardiography derived strain was also lower in group 1 vs. group 2 for speckle-tracking-derived peak longitudinal strain (-15.6 +/- 3.9% vs. -20.8 +/- 2.2%, P<0.002), circumferential strain (-16 +/- 3% vs. -19.8 +/- 1.9%, P<0.003) and radial strain (17.3 +/- 6.1% vs. 24.8 +/- 6.3%, P=0.010). Conclusion In previously asymptomatic children, myocarditis can present with symptoms of acute chest pain suspicious for coronary ischemia. Cardiac MRI and echocardiographic strain imaging are noninvasive, radiation-free tests of immense diagnostic utility in these situations. Long-term studies are needed to assess prognostic significance of these findings.