The complete genome sequence of a European goose reovirus strain

被引：13

作者：

Dandar, Eszter ^{[1
]}

Farkas, Szilvia L. ^{[1
]}

Marton, Szilvia ^{[1
]}

Oldal, Miklos ^{[2
,3
]}

Jakab, Ferenc ^{[2
,3
]}

Mato, Tamas ^{[4
]}

Palya, Vilmos ^{[4
]}

Banyai, Krisztian ^{[1
]}

机构：

[1] Hungarian Acad Sci, Vet Med Res Inst, Agr Res Ctr, H-1581 Budapest, Hungary

[2] Univ Pecs, Janos Szentagothai Res Ctr, Pecs, Hungary

[3] Univ Pecs, Fac Sci, Inst Biol, Pecs, Hungary

[4] Ceva Phylaxia Vet Biol Co Ltd, H-1107 Budapest, Hungary

来源：

ARCHIVES OF VIROLOGY | 2014年 / 159卷 / 08期

关键词：

DUCK REOVIRUS; ORIGIN REOVIRUS; PROTEIN; ALIGNMENT;

D O I：

10.1007/s00705-014-2003-9

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The complete genomic sequence of a Hungarian goose orthoreovirus strain (D20/99) is reported in this study. The genome of D20/99 is 22,969 bp in length (range, 3958 bp for L1 to 1124 bp for S4) and encodes 11 putative proteins. Pairwise sequence comparisons and phylogenetic analyses indicated that D20/99 shares genetic signatures with some contemporary Chinese duck and goose reovirus strains, except for the mu A, mu NS and sigma A protein coding genes, which represented independent genetic lineages. This study implies a greater genetic diversity among waterfowl-origin orthoreoviruses than hitherto recognized.

引用

页码：2165 / 2169

页数：5

共 20 条

[1] TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations [J].

Abascal, Federico ;

Zardoya, Rafael ;

Telford, Maximilian J. .

NUCLEIC ACIDS RESEARCH, 2010, 38 :W7-W13

[2] Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].

Altschul, SF ;

Madden, TL ;

Schaffer, AA ;

Zhang, JH ;

Zhang, Z ;

Miller, W ;

Lipman, DJ .

NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402

[3] BASIC LOCAL ALIGNMENT SEARCH TOOL [J].

ALTSCHUL, SF ;

GISH, W ;

MILLER, W ;

MYERS, EW ;

LIPMAN, DJ .

JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410

[4]

Attoui H., 2011, Virus Taxonomy: Ninth Report of the International Committee on taxonomy of Viruses, P541

[5] The goose reovirus genome segment encoding the minor outer capsid protein, σ1/σC, is bicistronic and shares structural similarities with its counterpart in muscovy duck reovirus [J].

Bányai, K ;

Palya, V ;

Benko, M ;

Bene, J ;

Havasi, V ;

Melegh, B ;

Szucs, G .

VIRUS GENES, 2005, 31 (03) :285-291

[6] Whole-genome sequencing of a green bush viper reovirus reveals a shared evolutionary history between reptilian and unusual mammalian orthoreoviruses [J].

Banyai, Krisztian ;

Borzak, Reka ;

Ihasz, Katalin ;

Feher, Eniko ;

Dan, Adam ;

Jakab, Ferenc ;

Papp, Tibor ;

Hetzel, Udo ;

Marschang, Rachel E. ;

Farkas, Szilvia L. .

ARCHIVES OF VIROLOGY, 2014, 159 (01) :153-158

[7] Outbreak-associated Novel Duck Reovirus, China, 2011 [J].

Chen, Zongyan ;

Zhu, Yinqi ;

Li, Chuanfong ;

Liu, Guangqing .

EMERGING INFECTIOUS DISEASES, 2012, 18 (07) :1209-1211

[8]

Dandár E, 2012, MAGY ALLATORVOSOK, V134, P564

[9] Viral genome sequencing by random priming methods [J].

Djikeng, Appolinaire ;

Halpin, Rebecca ;

Kuzmickas, Ryan ;

DePasse, Jay ;

Feldblyum, Jeremy ;

Sengamalay, Naomi ;

Afonso, Claudio ;

Zhang, Xinsheng ;

Anderson, Norman G. ;

Ghedin, Elodie ;

Spiro, David J. .

BMC GENOMICS, 2008, 9 (1)

[10] Muscovy duck reovirus σC protein is atypically encoded by the smallest genome segment [J].

Kuntz-Simon, G ;

Le Gall-Reculé, G ;

de Boisséson, C ;

Jestin, V .

JOURNAL OF GENERAL VIROLOGY, 2002, 83 :1189-1200

← 1 2 →