Pathguide: a Pathway Resource List

被引：258

作者：

Bader, Gary D. ^{[1
]}

Cary, Michael P. ^{[1
]}

Sander, Chris ^{[1
]}

机构：

[1] Mem Sloan Kettering Canc Ctr, Computat Biol Ctr, New York, NY 10021 USA

来源：

NUCLEIC ACIDS RESEARCH | 2006年 / 34卷

关键词：

D O I：

10.1093/nar/gkj126

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Pathguide: the Pathway Resource List (http://pathguide.org) is a meta-database that provides an overview of more than 190 web-accessible biological pathway and network databases. These include databases on metabolic pathways, signaling pathways, transcription factor targets, gene regulatory networks, genetic interactions, protein-compound interactions, and protein-protein interactions. The listed databases are maintained by diverse groups in different locations and the information in them is derived either from the scientific literature or from systematic experiments. Pathguide is useful as a starting point for biological pathway analysis and for content aggregation in integrated biological information systems.

引用

页码：D504 / D506

页数：3

共 5 条

[1] Pathway information for systems biology [J].

Cary, MP ;

Bader, GD ;

Sander, C .

FEBS LETTERS, 2005, 579 (08) :1815-1820

[2] The Molecular Biology Database Collection: 2005 update [J].

Galperin, MY .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D5-D24

[3] The HUPOPSI's Molecular Interaction format - a community standard for the representation of protein interaction data [J].

Hermjakob, H ;

Montecchi-Palazzi, L ;

Bader, G ;

Wojcik, R ;

Salwinski, L ;

Ceol, A ;

Moore, S ;

Orchard, S ;

Sarkans, U ;

von Mering, C ;

Roechert, B ;

Poux, S ;

Jung, E ;

Mersch, H ;

Kersey, P ;

Lappe, M ;

Li, YX ;

Zeng, R ;

Rana, D ;

Nikolski, M ;

Husi, H ;

Brun, C ;

Shanker, K ;

Grant, SGN ;

Sander, C ;

Bork, P ;

Zhu, WM ;

Pandey, A ;

Brazma, A ;

Jacq, B ;

Vidal, M ;

Sherman, D ;

Legrain, P ;

Cesareni, G ;

Xenarios, L ;

Eisenberg, D ;

Steipe, B ;

Hogue, C ;

Apweiler, R .

NATURE BIOTECHNOLOGY, 2004, 22 (02) :177-183

[4] The systems biology markup language (SBML):: a medium for representation and exchange of biochemical network models [J].

Hucka, M ;

Finney, A ;

Sauro, HM ;

Bolouri, H ;

Doyle, JC ;

Kitano, H ;

Arkin, AP ;

Bornstein, BJ ;

Bray, D ;

Cornish-Bowden, A ;

Cuellar, AA ;

Dronov, S ;

Gilles, ED ;

Ginkel, M ;

Gor, V ;

Goryanin, II ;

Hedley, WJ ;

Hodgman, TC ;

Hofmeyr, JH ;

Hunter, PJ ;

Juty, NS ;

Kasberger, JL ;

Kremling, A ;

Kummer, U ;

Le Novère, N ;

Loew, LM ;

Lucio, D ;

Mendes, P ;

Minch, E ;

Mjolsness, ED ;

Nakayama, Y ;

Nelson, MR ;

Nielsen, PF ;

Sakurada, T ;

Schaff, JC ;

Shapiro, BE ;

Shimizu, TS ;

Spence, HD ;

Stelling, J ;

Takahashi, K ;

Tomita, M ;

Wagner, J ;

Wang, J .

BIOINFORMATICS, 2003, 19 (04) :524-531

[5] CeIIML: its future, present and past [J].

Lloyd, CM ;

Halstead, MDB ;

Nielsen, PF .

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2004, 85 (2-3) :433-450

← 1 →