Putting our heads together: a consensus approach to brain/non-brain segmentation in T1-weighted MR volumes

被引:51
作者
Rehm, K
Schaper, K
Anderson, J
Woods, R
Stoltzner, S
Rottenberg, D
机构
[1] Univ Minnesota, Int Neuroimaging Consortium 11P, Dept Radiol, Minneapolis, MN 55417 USA
[2] Univ Minnesota, Dept Neurol, Minneapolis, MN 55417 USA
[3] Univ Calif Los Angeles, Dept Neurol, Los Angeles, CA 90095 USA
关键词
algorithm; brain; MR volume;
D O I
10.1016/j.neuroimage.2004.03.011
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
We describe an approach to brain extraction from T1-weighted MR volumes that uses a hierarchy of masks created by different models to form a consensus mask. The algorithm (McStrip) incorporates atlas-based extraction via nonlinear warping, intensity-threshold masking with connectivity constraints, and edge-based masking with morphological operations. Volume and boundary metrics were computed to evaluate the reproducibility and accuracy of McStrip against manual brain extraction on 38 scans from normal and ataxic subjects. McStrip masks were reproducible across six repeat scans of a normal subject and were significantly more accurate than the masks produced by any of the individual algorithmic components. (C) 2004 Elsevier Inc. All rights reserved.
引用
收藏
页码:1262 / 1270
页数:9
相关论文
共 30 条
[1]   Model creation and deformation for the automatic segmentation of the brain in MR images [J].
Aboutanos, GB ;
Nikanne, J ;
Watkins, N ;
Dawant, BM .
IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING, 1999, 46 (11) :1346-1356
[2]  
[Anonymous], 1999, The Prostate Cancer Journal, DOI DOI 10.1046/J.1525-1411.1999.14005.X
[3]   Voxel-based morphometry - The methods [J].
Ashburner, J ;
Friston, KJ .
NEUROIMAGE, 2000, 11 (06) :805-821
[4]   Fully automatic segmentation of the brain in MRI [J].
Atkins, MS ;
Mackiewich, BT .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 1998, 17 (01) :98-107
[5]   Design and construction of a realistic digital brain phantom [J].
Collins, DL ;
Zijdenbos, AP ;
Kollokian, V ;
Sled, JG ;
Kabani, NJ ;
Holmes, CJ ;
Evans, AC .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 1998, 17 (03) :463-468
[6]   IMPROVED LOCALIZATION OF CORTICAL ACTIVITY BY COMBINING EEG AND MEG WITH MRI CORTICAL SURFACE RECONSTRUCTION - A LINEAR-APPROACH [J].
DALE, AM ;
SERENO, MI .
JOURNAL OF COGNITIVE NEUROSCIENCE, 1993, 5 (02) :162-176
[7]   Using a deformable surface model to obtain a shape representation of the cortex [J].
Davatzikos, C ;
Bryan, RN .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 1996, 15 (06) :785-795
[8]   A cooperative framework for segmentation of MRI brain scans [J].
Germond, L ;
Dojat, M ;
Taylor, C ;
Garbay, C .
ARTIFICIAL INTELLIGENCE IN MEDICINE, 2000, 20 (01) :77-93
[9]   Validation of partial tissue segmentation of single-channel magnetic resonance images of the brain [J].
Grabowski, TJ ;
Frank, RJ ;
Szumski, NR ;
Brown, CK ;
Damasio, H .
NEUROIMAGE, 2000, 12 (06) :640-656
[10]   A method for assessing the accuracy of intersubject registration of the human brain using anatomic landmarks [J].
Grachev, ID ;
Berdichevsky, D ;
Rauch, SL ;
Heckers, S ;
Kennedy, DN ;
Caviness, VS ;
Alpert, NM .
NEUROIMAGE, 1999, 9 (02) :250-268