Lysinibacillus composti sp nov., isolated from compost

被引:10
|
作者
Hayat, Rifat [1 ,2 ,3 ,5 ]
Ahmed, Iftikhar [1 ]
Paek, Jayoung [4 ]
Sin, Yeseul [4 ]
Ehsan, Muhammad [1 ,2 ,3 ]
Iqbal, Muhammad [1 ]
Yokota, Akira [5 ]
Chang, Young H. [4 ]
机构
[1] Natl Agr Res Ctr, Natl Culture Collect Pakistan, Natl Inst Genom & Adv Biotechnol, Islamabad 45500, Pakistan
[2] Pir Mehr Ali Shah Arid Agr Univ, Dept Soil Sci, Rawalpindi 46300, Pakistan
[3] Pir Mehr Ali Shah Arid Agr Univ, SWC, Rawalpindi 46300, Pakistan
[4] KRIBB, Korean Collect Type Cultures, Biol Resources Ctr, Taejon 305806, South Korea
[5] Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1138657, Japan
关键词
Lysinibacillus composti sp nov; Compost; Cell-wall peptidoglycans; GEN; NOV; DEOXYRIBONUCLEIC-ACID; COMB; CELL-WALLS; BACILLUS; BACTERIUM; PROPOSAL; LYSINE; BORON; SOIL;
D O I
10.1007/s13213-013-0747-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
A Gram-negative, motile, rod-shaped, endospore-forming bacterial strain, designated as NCCP-36(T), was isolated from the compost of fruit and vegetable wastes. The strain NCCP-36(T) grew within a temperature range of 10-45 C-au < (optimum 28 C-au <) and a pH range of 6.5-8.5 (optimum 7.0), and its cells tolerated < 50 mM boron (optimum growth without boron) and 0-5 % NaCl (w/v) in tryptic soya broth medium. Based on comparative analysis of 16S rRNA gene sequence, strain NCCP-36(T) showed the highest similarity to Lysinibacillus sinduriensis BLB-1(T) (97.52 %) and L. xylanilyticus XDB9(T) (96.96 %), and < 97 % similarity with other closely related taxa. However, DNA-DNA relatedness between strain NCCP-36(T) and the closely related type strains of genus Lysinibacillus was a parts per thousand currency sign37 %. Phylogenetic and chemotaxonomic analyses [major polar lipids: diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and phospholipids; predominant menaquinone: MK-7; major cellular fatty acids: iso-C-15:0, antieso-C-15:0, and iso-C-16:0; DNA G+C contents: 37 mol %; Lys-Asp (type A4 alpha) in cell-wall peptidoglycans as diagnostic amino acids] also support the affiliation of strain NCCP-36(T) to genus Lysinibacillus. Based upon DNA-DNA relatedness as well as distinctive chemotaxonomic, phylogenetic, and genotypic data, we conclude that strain NCCP-36(T) belongs to a novel species of genus Lysinibacillus, for which the name Lysinibacillus composti sp. nov. is proposed. The type strain is NCCP-36(T) (JCM 18777(T) = KCTC 13796(T) = DSMZ 24785(T)).
引用
收藏
页码:1081 / 1088
页数:8
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