Lysinibacillus composti sp nov., isolated from compost

被引:10
作者
Hayat, Rifat [1 ,2 ,3 ,5 ]
Ahmed, Iftikhar [1 ]
Paek, Jayoung [4 ]
Sin, Yeseul [4 ]
Ehsan, Muhammad [1 ,2 ,3 ]
Iqbal, Muhammad [1 ]
Yokota, Akira [5 ]
Chang, Young H. [4 ]
机构
[1] Natl Agr Res Ctr, Natl Culture Collect Pakistan, Natl Inst Genom & Adv Biotechnol, Islamabad 45500, Pakistan
[2] Pir Mehr Ali Shah Arid Agr Univ, Dept Soil Sci, Rawalpindi 46300, Pakistan
[3] Pir Mehr Ali Shah Arid Agr Univ, SWC, Rawalpindi 46300, Pakistan
[4] KRIBB, Korean Collect Type Cultures, Biol Resources Ctr, Taejon 305806, South Korea
[5] Univ Tokyo, Inst Mol & Cellular Biosci, Bunkyo Ku, Tokyo 1138657, Japan
关键词
Lysinibacillus composti sp nov; Compost; Cell-wall peptidoglycans; GEN; NOV; DEOXYRIBONUCLEIC-ACID; COMB; CELL-WALLS; BACILLUS; BACTERIUM; PROPOSAL; LYSINE; BORON; SOIL;
D O I
10.1007/s13213-013-0747-1
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
A Gram-negative, motile, rod-shaped, endospore-forming bacterial strain, designated as NCCP-36(T), was isolated from the compost of fruit and vegetable wastes. The strain NCCP-36(T) grew within a temperature range of 10-45 C-au < (optimum 28 C-au <) and a pH range of 6.5-8.5 (optimum 7.0), and its cells tolerated < 50 mM boron (optimum growth without boron) and 0-5 % NaCl (w/v) in tryptic soya broth medium. Based on comparative analysis of 16S rRNA gene sequence, strain NCCP-36(T) showed the highest similarity to Lysinibacillus sinduriensis BLB-1(T) (97.52 %) and L. xylanilyticus XDB9(T) (96.96 %), and < 97 % similarity with other closely related taxa. However, DNA-DNA relatedness between strain NCCP-36(T) and the closely related type strains of genus Lysinibacillus was a parts per thousand currency sign37 %. Phylogenetic and chemotaxonomic analyses [major polar lipids: diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and phospholipids; predominant menaquinone: MK-7; major cellular fatty acids: iso-C-15:0, antieso-C-15:0, and iso-C-16:0; DNA G+C contents: 37 mol %; Lys-Asp (type A4 alpha) in cell-wall peptidoglycans as diagnostic amino acids] also support the affiliation of strain NCCP-36(T) to genus Lysinibacillus. Based upon DNA-DNA relatedness as well as distinctive chemotaxonomic, phylogenetic, and genotypic data, we conclude that strain NCCP-36(T) belongs to a novel species of genus Lysinibacillus, for which the name Lysinibacillus composti sp. nov. is proposed. The type strain is NCCP-36(T) (JCM 18777(T) = KCTC 13796(T) = DSMZ 24785(T)).
引用
收藏
页码:1081 / 1088
页数:8
相关论文
共 42 条
[1]   A novel highly boron tolerant bacterium, Bacillus boroniphilus sp nov., isolated from soil, that requires boron for its growth [J].
Ahmed, Iftikhar ;
Yokota, Akira ;
Fujiwara, Toru .
EXTREMOPHILES, 2007, 11 (02) :217-224
[2]   Proposal of Lysinibacillus boronitolerans gen. nov sp nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. [J].
Ahmed, Iftikhar ;
Yokota, Akira ;
Yamazoe, Atsushi ;
Fujiwara, Toru .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :1117-1125
[3]   Proposal of Viridibacillus gen. nov and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov and Viridibacillus neidei comb. nov. [J].
Albert, Richard A. ;
Archambault, Julieta ;
Lempa, Melissa ;
Hurst, Beth ;
Richardson, Christine ;
Gruenloh, Stephanie ;
Duran, Metin ;
Worliczek, Hanna Lucia ;
Huber, Birgit E. ;
Rossello-Mora, Ramon ;
Schumann, Peter ;
Busse, Hans-Juergen .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2007, 57 :2729-2737
[4]   PHYLOGENETIC HETEROGENEITY OF THE GENUS BACILLUS REVEALED BY COMPARATIVE-ANALYSIS OF SMALL-SUBUNIT-RIBOSOMAL RNA SEQUENCES [J].
ASH, C ;
FARROW, JAE ;
WALLBANKS, S ;
COLLINS, MD .
LETTERS IN APPLIED MICROBIOLOGY, 1991, 13 (04) :202-206
[5]  
ASH C, 1993, ANTON LEEUW INT J G, V64, P253
[6]   Comamonas koreensis sp nov., a non-motile species from wetland in Woopo, Korea [J].
Chang, YH ;
Han, JI ;
Chun, JS ;
Lee, KC ;
Rhee, MS ;
Kim, YB ;
Bae, KS .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2002, 52 :377-381
[7]   Sporolactobacillus vineae sp nov., a spore-forming lactic acid bacterium isolated from vineyard soil [J].
Chang, Young-Hyo ;
Jung, Min Young ;
Park, In-Soon ;
Oh, Hee-Mock .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2008, 58 :2316-2320
[8]   Lysinibacillus macroides sp nov., nom. rev. [J].
Coorevits, An ;
Dinsdale, Anna E. ;
Heyrman, Jeroen ;
Schumann, Peter ;
Van Landschoot, Anita ;
Logan, Niall A. ;
De Vos, Paul .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :1121-1127
[9]   FLUOROMETRIC DEOXYRIBONUCLEIC ACID DEOXYRIBONUCLEIC ACID HYBRIDIZATION IN MICRODILUTION WELLS AS AN ALTERNATIVE TO MEMBRANE-FILTER HYBRIDIZATION IN WHICH RADIOISOTOPES ARE USED TO DETERMINE GENETIC RELATEDNESS AMONG BACTERIAL STRAINS [J].
EZAKI, T ;
HASHIMOTO, Y ;
YABUUCHI, E .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1989, 39 (03) :224-229
[10]   PHYLOGENETIC INTERRELATIONSHIPS OF ROUND-SPORE-FORMING BACILLI CONTAINING CELL-WALLS BASED ON LYSINE AND THE NON-SPORE-FORMING GENERA CARYOPHANON, EXIGUOBACTERIUM, KURTHIA, AND PLANOCOCCUS [J].
FARROW, JAE ;
WALLBANKS, S ;
COLLINS, MD .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1994, 44 (01) :74-82