Transformable facultative thermophile Geobacillus stearothermophilus NUB3621 as a host strain for metabolic engineering

被引:25
作者
Blanchard, Kristen [1 ]
Robic, Srebrenka [2 ]
Matsumura, Ichiro [1 ]
机构
[1] Emory Univ, Sch Med, Dept Biochem, Atlanta, GA 30322 USA
[2] Agnes Scott Coll, Dept Biol, Decatur, GA 30030 USA
关键词
Geobacillus stearothermophilus; Facultative thermophile; Genome; Expression system; BACILLUS-STEAROTHERMOPHILUS; ALPHA-GALACTOSIDASE; GENE-EXPRESSION; GENOME SEQUENCE; SHUTTLE VECTOR; CLONING; IDENTIFICATION; PURIFICATION; STABILITY; EVOLUTION;
D O I
10.1007/s00253-014-5746-z
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Metabolic engineers develop inexpensive enantioselective syntheses of high-value compounds, but their designs are sometimes confounded by the misfolding of heterologously expressed proteins. Geobacillus stearothermophilus NUB3621 is a readily transformable facultative thermophile. It could be used to express and properly fold proteins derived from its many mesophilic or thermophilic Bacillaceae relatives or to direct the evolution of thermophilic variants of mesophilic proteins. Moreover, its capacity for high-temperature growth should accelerate chemical transformation rates in accordance with the Arrhenius equation and reduce the risks of microbial contamination. Its tendency to sporulate in response to nutrient depletion lowers the costs of storage and transportation. Here, we present a draft genome sequence of G. stearothermophilus NUB3621 and describe inducible and constitutive expression plasmids that function in this organism. These tools will help us and others to exploit the natural advantages of this system for metabolic engineering applications.
引用
收藏
页码:6715 / 6723
页数:9
相关论文
共 43 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[3]   Recombinant protein folding and misfolding in Escherichia coli [J].
Baneyx, F ;
Mujacic, M .
NATURE BIOTECHNOLOGY, 2004, 22 (11) :1399-1408
[4]  
BEUTLER E, 1972, J BIOL CHEM, V247, P7195
[5]   Protein stability promotes evolvability [J].
Bloom, JD ;
Labthavikul, ST ;
Otey, CR ;
Arnold, FH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (15) :5869-5874
[6]   Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids [J].
Bryksin, Anton V. ;
Matsumura, Ichiro .
BIOTECHNIQUES, 2010, 48 (06) :463-465
[7]  
BUJARD H, 1987, METHOD ENZYMOL, V155, P416
[8]   Genome Project Standards in a New Era of Sequencing [J].
Chain, P. S. G. ;
Grafham, D. V. ;
Fulton, R. S. ;
FitzGerald, M. G. ;
Hostetler, J. ;
Muzny, D. ;
Ali, J. ;
Birren, B. ;
Bruce, D. C. ;
Buhay, C. ;
Cole, J. R. ;
Ding, Y. ;
Dugan, S. ;
Field, D. ;
Garrity, G. M. ;
Gibbs, R. ;
Graves, T. ;
Han, C. S. ;
Harrison, S. H. ;
Highlander, S. ;
Hugenholtz, P. ;
Khouri, H. M. ;
Kodira, C. D. ;
Kolker, E. ;
Kyrpides, N. C. ;
Lang, D. ;
Lapidus, A. ;
Malfatti, S. A. ;
Markowitz, V. ;
Metha, T. ;
Nelson, K. E. ;
Parkhill, J. ;
Pitluck, S. ;
Qin, X. ;
Read, T. D. ;
Schmutz, J. ;
Sozhamannan, S. ;
Sterk, P. ;
Strausberg, R. L. ;
Sutton, G. ;
Thomson, N. R. ;
Tiedje, J. M. ;
Weinstock, G. ;
Wollam, A. ;
Detter, J. C. .
SCIENCE, 2009, 326 (5950) :236-237
[9]   GENETIC-ANALYSIS OF BACILLUS-STEAROTHERMOPHILUS BY PROTOPLAST FUSION [J].
CHEN, Z ;
WOJCIK, SF ;
WELKER, NE .
JOURNAL OF BACTERIOLOGY, 1986, 165 (03) :994-1001
[10]   Taxonomic revision of the genus Geobacillus: emendation of Geobacillus, G. stearothermophilus, G. jurassicus, G. toebii, G. thermodenitrificans and G. thermoglucosidans (nom. corrig., formerly 'thermoglucosidasius'); transfer of Bacillus thermantarcticus to the genus as G. thermantarcticus comb. nov.; proposal of Caldibacillus debilis gen. nov., comb. nov.; transfer of G. tepidamans to Anoxybacillus as A. tepidamans comb. nov.; and proposal of Anoxybacillus caldiproteolyticus sp nov. [J].
Coorevits, An ;
Dinsdale, Anna E. ;
Halket, Gillian ;
Lebbe, Liesbeth ;
De Vos, Paul ;
Van Landschoot, Anita ;
Logan, Niall A. .
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2012, 62 :1470-1485