The DNA methylation level against the background of the genome size and theterochromatin content in some species of the genus Secale L

被引:9
作者
Kalinka, Anna [1 ,2 ]
Achrem, Magdalena [1 ,2 ]
Poter, Paulina [1 ]
机构
[1] Univ Szczecin, Fac Biol, Dept Cell Biol, Szczecin, Poland
[2] Univ Szczecin, Fac Biol, Mol Biol & Biotechnol Ctr, Szczecin, Poland
关键词
t-heterochromatin; Secale; ELISA; Genome size; Methylation DNA; MSAP; PHYLOGENETIC-RELATIONSHIPS; TRANSPOSABLE ELEMENTS; CYTOSINE METHYLATION; ARABIDOPSIS-THALIANA; INDIVIDUAL VARIATION; EPIGENETIC VARIATION; EVOLUTIONARY TRENDS; MOLECULAR MARKERS; NUCLEAR-DNA; RETROTRANSPOSONS;
D O I
10.7717/peerj.2889
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Methylation of cytosine in DNA is one of the most important epigenetic modifications in eukaryotes and plays a crucial role in the regulation of gene activity and the maintenance of genomic integrity. DNA methylation and other epigenetic mechanisms affect the development, differentiation or the response of plants to biotic and abiotic stress. This study compared the level of methylation of cytosines on a global (ELISA) and genomic scale (MSAP) between the species of the genus Secale.We analyzed whether the interspecific variation of cytosine methylation was associated with the size of the genome (C -value) and the content of telomeric heterochromatin. MSAP analysis showed that S. sylvestre was the most distinct species among the studied rye taxa however, the results clearly indicated that these differences were not statistically significant, The total methylation level of the studied loci was very similar in all taxa and ranged from 60% in S. strictum ssp. africanum to 66% in S. cereale ssp. segetale, which confirmed the lack of significant differences in the sequence methylation pattern between the pairs of rye taxa. The level of global cytosine methylation in the DNA was not significantly associated with the content of t-heterochromatin and did not overlap with the existing taxonomic rye relationships. The highest content of 5-methylcytosine was found in S. cereale ssp, segetale (83%), while very low in S. stritctum ssp. srtctum (53%), which was significantly different from the rnethylation state of all taxa, except for S. sylvestre. The other studied taxa of rye had a similar level of methylated cytosine ranging from 66.42% (S. vavilovii) to 74.41% in (S. cereale ssp, afghanicum), The results obtained in this study are evidence that the percentage of methylated cytosine cannot be inferred solely based on the genome size or t-heterochromatin. This is a significantly more complex issue.
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相关论文
共 105 条
[1]   Assessment of genetic relationships among Secale taxa by using ISSR and IRAP markers and the chromosomal distribution of the AAC microsatellite sequence [J].
Achrem, Magdalena ;
Kalinka, Anna ;
Rogalska, Stanislawa Maria .
TURKISH JOURNAL OF BOTANY, 2014, 38 (02) :213-225
[2]   Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis [J].
Ahmed, Ikhlak ;
Sarazin, Alexis ;
Bowler, Chris ;
Colot, Vincent ;
Quesneville, Hadi .
NUCLEIC ACIDS RESEARCH, 2011, 39 (16) :6919-6931
[3]   Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms [J].
Alonso, Conchita ;
Perez, Ricardo ;
Bazaga, Pilar ;
Herrera, Carlos M. .
FRONTIERS IN GENETICS, 2015, 6
[4]   INDIVIDUAL VARIATION IN SIZE AND FECUNDITY IS CORRELATED WITH DIFFERENCES IN GLOBAL DNA CYTOSINE METHYLATION IN THE PERENNIAL HERB HELLEBORUS FOETIDUS (RANUNCULACEAE) [J].
Alonso, Conchita ;
Perez, Ricardo ;
Bazaga, Pilar ;
Medrano, Monica ;
Herrera, Carlos M. .
AMERICAN JOURNAL OF BOTANY, 2014, 101 (08) :1309-1313
[5]   PATTERNS OF DEVELOPMENTAL AND HERITABLE CHANGE IN METHYLATION OF THE SUPPRESSOR-MUTATOR TRANSPOSABLE ELEMENT [J].
BANKS, JA ;
FEDOROFF, N .
DEVELOPMENTAL GENETICS, 1989, 10 (06) :425-437
[6]   Using SD-AFLP and MSAP to assess CCGG methylation in the banana genome [J].
Baurens, FC ;
Bonnot, F ;
Bienvenu, D ;
Causse, S ;
Legavre, T .
PLANT MOLECULAR BIOLOGY REPORTER, 2003, 21 (04) :339-348
[7]   DNA methylation and epigenetics [J].
Bender, J .
ANNUAL REVIEW OF PLANT BIOLOGY, 2004, 55 :41-68
[8]  
Bennett M., 2012, Angiosperm DNA C-values database (release 8.0
[9]   VARIATION IN NUCLEAR-DNA IN GENUS SECALE [J].
BENNETT, MD ;
GUSTAFSON, JP ;
SMITH, JB .
CHROMOSOMA, 1977, 61 (02) :149-176
[10]   NUCLEAR-DNA AMOUNTS IN ANGIOSPERMS [J].
BENNETT, MD ;
SMITH, JB .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 1976, 274 (933) :227-274