The Protein Data Bank

被引：1463

作者：

Berman, HM

Battistuz, T

Bhat, TN

Bluhm, WF

Bourne, PE

Burkhardt, K

Iype, L

Jain, S

Fagan, P

Marvin, J

Padilla, D

Ravichandran, V

Schneider, B

Thanki, N

Weissig, H

Westbrook, JD

Zardecki, C

机构：

[1] Rutgers State Univ, Dept Chem, Piscataway, NJ 08854 USA

[2] Univ Calif San Diego, San Diego Supercomp Ctr, La Jolla, CA 92093 USA

[3] NIST, Biotechnol Div, Gaithersburg, MD 20899 USA

[4] Univ Calif San Diego, Dept Pharmacol, La Jolla, CA 92093 USA

[5] Burnham Inst, La Jolla, CA 92037 USA

来源：

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2002年 / 58卷

关键词：

D O I：

10.1107/S0907444902003451

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The Protein Data Bank [PDB; Berman, Westbrook et al. (2000), Nucleic Acids Res. 28, 235-242; http://www.pdb.org/] is the single worldwide archive of primary structural data of biological macromolecules. Many secondary sources of information are derived from PDB data. It is the starting point for studies in structural bioinformatics. This article describes the goals of the PDB, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource. The reader should come away with an understanding of the scope of the PDB and what is provided by the resource.

引用

页码：899 / 907

页数：9

共 33 条

[1]

ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999

[2] The Protein Data Bank and the challenge of structural genomics [J].

Berman, HM ;

Bhat, TN ;

Bourne, PE ;

Feng, ZK ;

Gilliland, G ;

Weissig, H ;

Westbrook, J .

NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) :957-959

[3] THE NUCLEIC-ACID DATABASE - A COMPREHENSIVE RELATIONAL DATABASE OF 3-DIMENSIONAL STRUCTURES OF NUCLEIC-ACIDS [J].

BERMAN, HM ;

OLSON, WK ;

BEVERIDGE, DL ;

WESTBROOK, J ;

GELBIN, A ;

DEMENY, T ;

HSIEH, SH ;

SRINIVASAN, AR ;

SCHNEIDER, B .

BIOPHYSICAL JOURNAL, 1992, 63 (03) :751-759

[4] The Protein Data Bank [J].

Berman, HM ;

Westbrook, J ;

Feng, Z ;

Gilliland, G ;

Bhat, TN ;

Weissig, H ;

Shindyalov, IN ;

Bourne, PE .

NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242

[5] The Nucleic Acid Database [J].

Berman, HM ;

Westbrook, J ;

Feng, ZK ;

Iype, L ;

Schneider, B ;

Zardecki, C .

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2002, 58 :889-898

[6]

BERMAN HM, 2001, INT TABLES CRYSTALLO, VF, P675

[7] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].

BERNSTEIN, FC ;

KOETZLE, TF ;

WILLIAMS, GJB ;

MEYER, EF ;

BRICE, MD ;

RODGERS, JR ;

KENNARD, O ;

SHIMANOUCHI, T ;

TASUMI, M .

JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542

[8] The PDB data uniformity project [J].

Bhat, TN ;

Bourne, P ;

Feng, ZK ;

Gilliland, G ;

Jain, S ;

Ravichandran, V ;

Schneider, B ;

Schneider, K ;

Thanki, N ;

Weissig, H ;

Westbrook, J ;

Berman, HM .

NUCLEIC ACIDS RESEARCH, 2001, 29 (01) :214-218

[9] Macromolecular crystallographic information file [J].

Bourne, PE ;

Berman, HM ;

McMahon, B ;

Watenpaugh, KD ;

Westbrook, JD ;

Fitzgerald, PMD .

MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :571-590

[10] Geometric parameters in nucleic acids: Nitrogenous bases [J].

Clowney, L ;

Jain, SC ;

Srinivasan, AR ;

Westbrook, J ;

Olson, WK ;

Berman, HM .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (03) :509-518

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