EV-associated miRNAs from peritoneal lavage as potential diagnostic biomarkers in colorectal cancer

被引:34
作者
Roman-Canal, Berta [1 ,2 ,3 ]
Tarragona, Jordi [1 ]
Pablo Moiola, Cristian [1 ,4 ]
Gatius, Sonia [1 ]
Bonnin, Sarah [5 ]
Ruiz-Miro, Maria [1 ]
Enrique Sierra, Jose [6 ]
Rufas, Maria [6 ]
Gonzalez, Esperanza [7 ]
Porcel, Jose M. [8 ]
Gil-Moreno, Antonio [4 ,9 ]
Falcon-Perez, Juan M. [7 ,10 ]
Ponomarenko, Julia [5 ,11 ]
Matias-Guiu, Xavier [1 ,2 ,12 ]
Colas, Eva [4 ]
机构
[1] Univ Lleida, CIBERONC, Biomed Res Inst Lleida IRBLleida, Dept Pathol & Mol Genet,Oncol Pathol Grp, Lleida, Spain
[2] Univ Hosp Bellvitge, Bellvitge Biomed Res Inst IDIBELL, Dept Pathol, Barcelona, Spain
[3] UAB, Barcelona, Spain
[4] Univ Autonoma Barcelona, Vall Hebron Res Inst VHIR, Biomed Res Grp Gynecol, CIBERONC, Pg Vall Hebron 119-129, Barcelona 08035, Spain
[5] Barcelona Inst Sci & Technol, Ctr Genom Regulat CRG, Dr Aiguader 88, Barcelona 08003, Spain
[6] Hosp Arnau Vilanova, Biomed Res Inst Lleida IRBLleida, Dept Surg, Lleida, Spain
[7] CIBEREHD Bizkaia Technol Pk, Exosomes Lab & Metabol Platform, CIC bioGUNE, Derio, Spain
[8] Arnau De Vilanova Univ Hosp, IRBLleida, Pleural Med Unit, Lleida, Spain
[9] Vall Hebron Univ Hosp, Gynecol Oncol Dept, CIBERONC, Barcelona, Spain
[10] Basque Fdn Sci, IKER BASQUE, Bilbao 48011, Spain
[11] Univ Pompeu Fabra, Barcelona, Spain
[12] Biomed Res Inst Lleida IrbLleida, Dept Med UdL, Oncol Pathol Grp, Av Rovira Roure 80, Lleida 25198, Spain
关键词
Colorectal cancer; Biomarkers; Diagnostic; miRNAs; Ascitic fluid; Peritoneal lavage; Liquid biopsy; Extracellular vesicles; Colon cancer; DIFFERENTIAL EXPRESSION; EXTRACELLULAR VESICLES; TARGETED PROTEOMICS; COLON; MICRORNA; SERUM; PROGNOSIS;
D O I
10.1186/s12967-019-1954-8
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
BackgroundColorectal cancer (CRC) is the third leading cause of cancer-related mortality worldwide. Current systematic methods for diagnosing have inherent limitations so development of a minimally-invasive diagnosis, based on the identification of sensitive biomarkers in liquid biopsies could therefore facilitate screening among population at risk.MethodsIn this study, we aim to develop a novel approach to identify highly sensitive and specific biomarkers by investigating the use of extracellular vesicles (EVs) isolated from the peritoneal lavage as a source of potential miRNA diagnostic biomarkers. We isolated EVs by ultracentrifugation from 25 ascitic fluids and 25 peritoneal lavages from non-cancer and CRC patients, respectively. Analysis of the expression of EV-associated miRNAs was performed using Taqman OpenArray technology through which we could detect 371 miRNAs.Results210 miRNAs were significantly dysregulated (adjusted p value<0.05 and abs(logFC)1). The top-10 miRNAs, which had the AUC value higher than 0.95, were miRNA-199b-5p, miRNA-150-5p, miRNA-29c-5p, miRNA-218-5p, miRNA-99a-3p, miRNA-383-5p, miRNA-199a-3p, miRNA-193a-5p, miRNA-10b-5p and miRNA-181c-5p.ConclusionsThis finding opens the avenue to the use of EV-associated miRNA of peritoneal lavages as an untapped source of biomarkers for CRC.
引用
收藏
页数:14
相关论文
共 38 条
[1]  
Ahmed FE, 2018, METHODS MOL BIOL, V1765, P203, DOI 10.1007/978-1-4939-7765-9_13
[2]  
Ahmed FE, 2013, CANCER GENOM PROTEOM, V10, P93
[3]  
[Anonymous], R LANG ENV STAT COMP
[4]  
[Anonymous], CONTROLLING FALSE DI
[5]   Characterization of global microRNA expression reveals oncogenic potential of miR-145 in metastatic colorectal cancer [J].
Arndt, Greg M. ;
Dossey, Lesley ;
Cullen, Lara M. ;
Lai, Angela ;
Druker, Riki ;
Eisbacher, Michael ;
Zhang, Chunyan ;
Tran, Nham ;
Fan, Hongtao ;
Retzlaff, Kathy ;
Bittner, Anton ;
Raponi, Mitch .
BMC CANCER, 2009, 9 :374
[6]   Exosome-like vesicles in uterine aspirates: a comparison of ultracentrifugation-based isolation protocols [J].
Campoy, Irene ;
Lanau, Lucia ;
Altadill, Tatiana ;
Sequeiros, Tamara ;
Cabrera, Silvia ;
Cubo-Abert, Montserrat ;
Perez-Benavente, Assumpcion ;
Garcia, Angel ;
Borros, Salvador ;
Santamaria, Anna ;
Ponce, Jordi ;
Matias-Guiu, Xavier ;
Reventos, Jaume ;
Gil-Moreno, Antonio ;
Rigau, Marina ;
Colas, Eva .
JOURNAL OF TRANSLATIONAL MEDICINE, 2016, 14
[7]   Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases [J].
Chen, Xi ;
Ba, Yi ;
Ma, Lijia ;
Cai, Xing ;
Yin, Yuan ;
Wang, Kehui ;
Guo, Jigang ;
Zhang, Yujing ;
Chen, Jiangning ;
Guo, Xing ;
Li, Qibin ;
Li, Xiaoying ;
Wang, Wenjing ;
Zhang, Yan ;
Wang, Jin ;
Jiang, Xueyuan ;
Xiang, Yang ;
Xu, Chen ;
Zheng, Pingping ;
Zhang, Juanbin ;
Li, Ruiqiang ;
Zhang, Hongjie ;
Shang, Xiaobin ;
Gong, Ting ;
Ning, Guang ;
Wang, Jun ;
Zen, Ke ;
Zhang, Junfeng ;
Zhang, Chen-Yu .
CELL RESEARCH, 2008, 18 (10) :997-1006
[8]   HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R [J].
Dvinge, Heidi ;
Bertone, Paul .
BIOINFORMATICS, 2009, 25 (24) :3325-3326
[9]   miRWalk2.0: a comprehensive atlas of microRNA-target interactions [J].
Dweep, Harsh ;
Gretz, Norbert .
NATURE METHODS, 2015, 12 (08) :697-697
[10]   Differential Expression of miRNAs in Colorectal Cancer: Comparison of Paired Tumor Tissue and Adjacent Normal Mucosa Using High-Throughput Sequencing [J].
Hamfjord, Julian ;
Stangeland, Astrid M. ;
Hughes, Timothy ;
Skrede, Martina L. ;
Tveit, Kjell M. ;
Ikdahl, Tone ;
Kure, Elin H. .
PLOS ONE, 2012, 7 (04)