The isolation to purify of a rat Liver mitochondrial thioredoxin reductase is reported. The mitochondrial enzyme shows a chromatographic behavior different from that of the cytosolic enzyme. The purified enzyme, after sodium dodecylsulfate-polyacrylamide gel electrophoresis, yields a single band wit a molecular weight of approximately 54 kDa. The apparent K-m for E. coli thioredoxin is about 13 mu M, while the apparent K-m for 5,5'-dithiobis (2-nitrobenzoic acid) is 530 mu M, values comparable to those reported for the cytosolic enzyme. Mitochondrial thioredoxin reductase, in addition to its natural substrate thioredoxin, is also able to reduce chemically unrelated compounds such as 5,5'-dithiobis (2-nitrobenzoic acid), selenite, and alloxan: the enzyme is inhibited by classical inhibitors of the cytosolic enzyme such as 1-chloro-2,4-dinitrobenzene and 13 cis-retinoic acid. A strong inhibitory action is also elicited by Mn2+ and Zn2+ ions, Thiol status appears critically involved in the control of membrane permeability and, therefore, a thiol/disulfide transition involving reduced pyridine nucleotides, matrix soluble thiols, and inner membrane thiols appears to play a fundamental role. The potential role of thioredoxin/thioredoxin reductase system in the control and redox regulation of the mitochondrial membrane permeability, is discussed. (C) 1998 Elsevier Science Inc.