machine learning;
random forest;
neural networks;
classification and regression trees;
AUC;
kappa;
Iberian Peninsula;
Pinus sylvestris L;
habitat suitability;
D O I:
10.1016/j.ecolmodel.2006.03.015
中图分类号:
Q14 [生态学(生物生态学)];
学科分类号:
071012 ;
0713 ;
摘要:
We present a modelling framework for predicting forest areas. The framework is obtained by integrating a machine learning software suite within the GRASS Geographical Information System (GIS) and by providing additional methods for predictive habitat modelling. Three machine learning techniques (Tree-Based Classification, Neural Networks and Random Forest) are available in parallel for modelling from climatic and topographic variables. Model evaluation and parameter selection are measured by sensitivity-specificity ROC analysis, while the final presence and absence maps are obtained through maximisation of the kappa statistic. The modelling framework is applied at a resolution of 1km. with Iberian subpopulations of Pinus sylvestris L. forests. For this data set, the most accurate algorithm is Breiman's random forest, an ensemble method which provides automatic combination of tree-classifiers trained on bootstrapped subsamples and randomised variable sets. All models show a potential area of P.syluestris for the Iberian Peninsula which is larger than the present one, a result corroborated by regional pollen analyses. (c) 2006 Elsevier B.V All rights reserved.
机构:
Walter & Eliza Hall Inst Med Res, Div Mol Med, Melbourne, Vic 3050, Australia
Univ Melbourne, Dept Med Biol, Melbourne, Vic 3050, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Blewitt, Marnie E.
Gendrel, Anne-Valerie
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, MRC, Ctr Clin Sci, London SW7 2AZ, England
Univ London Imperial Coll Sci Technol & Med, MRC, Fac Med, London SW7 2AZ, EnglandQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Gendrel, Anne-Valerie
Pang, Zhenyi
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Pang, Zhenyi
Sparrow, Duncan B.
论文数: 0引用数: 0
h-index: 0
机构:
Univ New S Wales, Victor Chang Cardiac Res Inst, Sydney, NSW 2010, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Sparrow, Duncan B.
Whitelaw, Nadia
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, Australia
Univ Queensland, Sch Med, Brisbane, Qld 4072, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Whitelaw, Nadia
Craig, Jeffrey M.
论文数: 0引用数: 0
h-index: 0
机构:
Murdoch Childrens Res Inst, Parkville, Vic 3052, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Craig, Jeffrey M.
Apedaile, Anwyn
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, MRC, Ctr Clin Sci, London SW7 2AZ, England
Univ London Imperial Coll Sci Technol & Med, MRC, Fac Med, London SW7 2AZ, EnglandQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Apedaile, Anwyn
Hilton, Douglas J.
论文数: 0引用数: 0
h-index: 0
机构:
Walter & Eliza Hall Inst Med Res, Div Mol Med, Melbourne, Vic 3050, Australia
Univ Melbourne, Dept Med Biol, Melbourne, Vic 3050, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Hilton, Douglas J.
Dunwoodie, Sally L.
论文数: 0引用数: 0
h-index: 0
机构:Queensland Inst Med Res, Brisbane, Qld 4006, Australia
Dunwoodie, Sally L.
Brockdorff, Neil
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, MRC, Ctr Clin Sci, London SW7 2AZ, England
Univ London Imperial Coll Sci Technol & Med, MRC, Fac Med, London SW7 2AZ, EnglandQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Brockdorff, Neil
Kay, Graham F.
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Kay, Graham F.
Whitelaw, Emma
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
机构:
Walter & Eliza Hall Inst Med Res, Div Mol Med, Melbourne, Vic 3050, Australia
Univ Melbourne, Dept Med Biol, Melbourne, Vic 3050, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Blewitt, Marnie E.
Gendrel, Anne-Valerie
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, MRC, Ctr Clin Sci, London SW7 2AZ, England
Univ London Imperial Coll Sci Technol & Med, MRC, Fac Med, London SW7 2AZ, EnglandQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Gendrel, Anne-Valerie
Pang, Zhenyi
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Pang, Zhenyi
Sparrow, Duncan B.
论文数: 0引用数: 0
h-index: 0
机构:
Univ New S Wales, Victor Chang Cardiac Res Inst, Sydney, NSW 2010, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Sparrow, Duncan B.
Whitelaw, Nadia
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, Australia
Univ Queensland, Sch Med, Brisbane, Qld 4072, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Whitelaw, Nadia
Craig, Jeffrey M.
论文数: 0引用数: 0
h-index: 0
机构:
Murdoch Childrens Res Inst, Parkville, Vic 3052, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Craig, Jeffrey M.
Apedaile, Anwyn
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, MRC, Ctr Clin Sci, London SW7 2AZ, England
Univ London Imperial Coll Sci Technol & Med, MRC, Fac Med, London SW7 2AZ, EnglandQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Apedaile, Anwyn
Hilton, Douglas J.
论文数: 0引用数: 0
h-index: 0
机构:
Walter & Eliza Hall Inst Med Res, Div Mol Med, Melbourne, Vic 3050, Australia
Univ Melbourne, Dept Med Biol, Melbourne, Vic 3050, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Hilton, Douglas J.
Dunwoodie, Sally L.
论文数: 0引用数: 0
h-index: 0
机构:Queensland Inst Med Res, Brisbane, Qld 4006, Australia
Dunwoodie, Sally L.
Brockdorff, Neil
论文数: 0引用数: 0
h-index: 0
机构:
Univ London Imperial Coll Sci Technol & Med, MRC, Ctr Clin Sci, London SW7 2AZ, England
Univ London Imperial Coll Sci Technol & Med, MRC, Fac Med, London SW7 2AZ, EnglandQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Brockdorff, Neil
Kay, Graham F.
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia
Kay, Graham F.
Whitelaw, Emma
论文数: 0引用数: 0
h-index: 0
机构:
Queensland Inst Med Res, Brisbane, Qld 4006, AustraliaQueensland Inst Med Res, Brisbane, Qld 4006, Australia