Phosphorylation of an Intrinsically Disordered Segment in Ets1 Shifts Conformational Sampling toward Binding-Competent Substates

被引:19
作者
Bui, Jennifer M. [1 ]
Gsponer, Joerg [2 ]
机构
[1] Univ Calif San Diego, Qualcomm Inst, La Jolla, CA 92093 USA
[2] Univ British Columbia, Dept Biochem & Mol Biol, Vancouver, BC V6T 1Z4, Canada
基金
加拿大自然科学与工程研究理事会;
关键词
TAZ1; DOMAIN; PROTEIN; DOCKING; ASSOCIATION; SOFTWARE; DYNAMICS; DESIGN; FAMILY; SITE; CBP;
D O I
10.1016/j.str.2014.06.002
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Functions of many proteins are affected by post-translational modifications of intrinsically disordered (ID) regions, yet little is known about the underlying molecular mechanisms. By combining molecular dynamics simulations and protein docking, we demonstrate that the addition of phosphates to an ID segment adjacent to the PNT domain of Ets1 directs conformational sampling toward substates that are most compatible with high-affinity binding of the TAZ1 domain of its coactivator CBP. The phosphate charges disrupt salt bridges and thereby open a hydrophobic cleft and expose hydrophobic residues at the ID N terminus. The structure of the PNT-TAZ1 complex that we determined shows that PNT binds to TAZ1 via these hydrophobic regions in a similar manner to how it interacts with other partners. Our calculations reveal a dual effect of phosphorylation in that it changes the dynamics of PNT so that it becomes more compatible for TAZ1 binding and increases complementarity with this binding partner.
引用
收藏
页码:1196 / 1203
页数:8
相关论文
共 26 条
[1]   Molecular dynamics: Survey of methods for simulating the activity of proteins [J].
Adcock, Stewart A. ;
McCammon, J. Andrew .
CHEMICAL REVIEWS, 2006, 106 (05) :1589-1615
[2]   Conformational transitions in protein-protein association: Binding of fasciculin-2 to acetylcholinesterase [J].
Bui, JM ;
Radic, Z ;
Taylor, P ;
McCammon, JA .
BIOPHYSICAL JOURNAL, 2006, 90 (09) :3280-3287
[3]   Structural basis for Hif-1α/CBP recognition in the cellular hypoxic response [J].
Dames, SA ;
Martinez-Yamout, M ;
De Guzman, RN ;
Dyson, HJ ;
Wright, PE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (08) :5271-5276
[4]   Interaction of the TAZ1 domain of the CREB-binding protein with the activation domain of CITED2 - Regulation by competition between intrinsically unstructured ligands for non-identical binding sites [J].
De Guzman, RN ;
Martinez-Yamout, MA ;
Dyson, HJ ;
Wright, PE .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (04) :3042-3049
[5]   CBP/p300 TAZ1 domain forms a structured scaffold for ligand binding [J].
De Guzman, RN ;
Wojciak, JM ;
Martinez-Yamout, MA ;
Dyson, HJ ;
Wright, PE .
BIOCHEMISTRY, 2005, 44 (02) :490-497
[6]   Open source clustering software [J].
de Hoon, MJL ;
Imoto, S ;
Nolan, J ;
Miyano, S .
BIOINFORMATICS, 2004, 20 (09) :1453-1454
[7]   Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin [J].
Fleishman, Sarel J. ;
Whitehead, Timothy A. ;
Ekiert, Damian C. ;
Dreyfus, Cyrille ;
Corn, Jacob E. ;
Strauch, Eva-Maria ;
Wilson, Ian A. ;
Baker, David .
SCIENCE, 2011, 332 (6031) :816-821
[8]   Is allostery an intrinsic property of all dynamic proteins? [J].
Gunasekaran, K ;
Ma, BY ;
Nussinov, R .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2004, 57 (03) :433-443
[9]  
Hartigan J. A., 1979, Applied Statistics, V28, P100, DOI 10.2307/2346830
[10]   Genomic and Biochemical Insights into the Specificity of ETS Transcription Factors [J].
Hollenhorst, Peter C. ;
McIntosh, Lawrence P. ;
Graves, Barbara J. .
ANNUAL REVIEW OF BIOCHEMISTRY, VOL 80, 2011, 80 :437-471