Alternative polyadenylation of mRNA precursors

被引:784
作者
Tian, Bin [1 ]
Manley, James L. [2 ]
机构
[1] Rutgers State Univ, New Jersey Med Sch, Dept Microbiol Biochem & Mol Genet, Newark, NJ 07103 USA
[2] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
基金
美国国家卫生研究院;
关键词
CLEAVAGE FACTOR-I; 3' UNTRANSLATED REGIONS; GENOME-WIDE ANALYSIS; LARGE-SCALE ANALYSIS; POLY(A) TAIL LENGTH; POLYMERASE-II; GENE-EXPRESSION; SR PROTEINS; INTRONIC CLEAVAGE; BINDING PROTEINS;
D O I
10.1038/nrm.2016.116
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Alternative polyadenylation (APA) is an RNA-processing mechanism that generates distinct 3' termini on mRNAs and other RNA polyrnerase II transcripts. It is widespread across all eukaryotic species and is recognized as a major mechanism of gene regulation. APA exhibits tissue specificity and is important for cell proliferation and differentiation. In this Review, we discuss the roles of APA in diverse cellular processes, including mRNA metabolism, protein diversification and protein localization, and more generally in gene regulation. We also discuss the molecular mechanisms underlying APA, such as variation in the concentration of core processing factors and RNA-binding proteins, as well as transcription-based regulation.
引用
收藏
页码:18 / 30
页数:13
相关论文
共 178 条
  • [81] Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing
    Kyburz, Andrea
    Friedlein, Arno
    Langen, Hanno
    Keller, Walter
    [J]. MOLECULAR CELL, 2006, 23 (02) : 195 - 205
  • [82] Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal
    Lackford, Brad
    Yao, Chengguo
    Charles, Georgette M.
    Weng, Lingjie
    Zheng, Xiaofeng
    Choi, Eun-A
    Xie, Xiaohui
    Wan, Ji
    Xing, Yi
    Freudenberg, Johannes M.
    Yang, Pengyi
    Jothi, Raja
    Hu, Guang
    Shi, Yongsheng
    [J]. EMBO JOURNAL, 2014, 33 (08) : 878 - 889
  • [83] Systematic Analysis of Cis-Elements in Unstable mRNAs Demonstrates that CUGBP1 Is a Key Regulator of mRNA Decay in Muscle Cells
    Lee, Jerome E.
    Lee, Ju Youn
    Wilusz, Jeffrey
    Tian, Bin
    Wilusz, Carol J.
    [J]. PLOS ONE, 2010, 5 (06):
  • [84] Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes
    Lee, Ju Youn
    Ji, Zhe
    Tian, Bin
    [J]. NUCLEIC ACIDS RESEARCH, 2008, 36 (17) : 5581 - 5590
  • [85] Hexanucleotide Repeats in ALS/FTD Form Length-Dependent RNA Foci, Sequester RNA Binding Proteins, and Are Neurotoxic
    Lee, Youn-Bok
    Chen, Han-Jou
    Peres, Joao N.
    Gomez-Deza, Jorge
    Attig, Jan
    Stalekar, Maja
    Troakes, Claire
    Nishimura, Agnes L.
    Scotter, Emma L.
    Vance, Caroline
    Adachi, Yoshitsugu
    Sardone, Valentina
    Miller, Jack W.
    Smith, Bradley N.
    Gallo, Jean-Marc
    Ule, Jernej
    Hirth, Frank
    Rogelj, Boris
    Houart, Corinne
    Shaw, Christopher E.
    [J]. CELL REPORTS, 2013, 5 (05): : 1178 - 1186
  • [86] Alternative cleavage and polyadenylation in spermatogenesis connects chromatin regulation with post-transcriptional control
    Li, Wencheng
    Park, Ji Yeon
    Zheng, Dinghai
    Hoque, Mainul
    Yehia, Ghassan
    Tian, Bin
    [J]. BMC BIOLOGY, 2016, 14
  • [87] Systematic Profiling of Poly(A) plus Transcripts Modulated by Core 3′ End Processing and Splicing Factors Reveals Regulatory Rules of Alternative Cleavage and Polyadenylation
    Li, Wencheng
    You, Bei
    Hoque, Mainul
    Zheng, Dinghai
    Luo, Wenting
    Ji, Zhe
    Park, Ji Yeon
    Gunderson, Samuel I.
    Kalsotra, Auinash
    Manley, James L.
    Tian, Bin
    [J]. PLOS GENETICS, 2015, 11 (04):
  • [88] Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression
    Lianoglou, Steve
    Garg, Vidur
    Yang, Julie L.
    Leslie, Christina S.
    Mayr, Christine
    [J]. GENES & DEVELOPMENT, 2013, 27 (21) : 2380 - 2396
  • [89] HITS-CLIP yields genome-wide insights into brain alternative RNA processing
    Licatalosi, Donny D.
    Mele, Aldo
    Fak, John J.
    Ule, Jernej
    Kayikci, Melis
    Chi, Sung Wook
    Clark, Tyson A.
    Schweitzer, Anthony C.
    Blume, John E.
    Wang, Xuning
    Darnell, Jennifer C.
    Darnell, Robert B.
    [J]. NATURE, 2008, 456 (7221) : 464 - U22
  • [90] Converging Mechanisms in ALS and FTD: Disrupted RNA and Protein Homeostasis
    Ling, Shuo-Chien
    Polymenidou, Magdalini
    Cleveland, Don W.
    [J]. NEURON, 2013, 79 (03) : 416 - 438