Alternative polyadenylation of mRNA precursors

被引:826
作者
Tian, Bin [1 ]
Manley, James L. [2 ]
机构
[1] Rutgers State Univ, New Jersey Med Sch, Dept Microbiol Biochem & Mol Genet, Newark, NJ 07103 USA
[2] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
基金
美国国家卫生研究院;
关键词
CLEAVAGE FACTOR-I; 3' UNTRANSLATED REGIONS; GENOME-WIDE ANALYSIS; LARGE-SCALE ANALYSIS; POLY(A) TAIL LENGTH; POLYMERASE-II; GENE-EXPRESSION; SR PROTEINS; INTRONIC CLEAVAGE; BINDING PROTEINS;
D O I
10.1038/nrm.2016.116
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Alternative polyadenylation (APA) is an RNA-processing mechanism that generates distinct 3' termini on mRNAs and other RNA polyrnerase II transcripts. It is widespread across all eukaryotic species and is recognized as a major mechanism of gene regulation. APA exhibits tissue specificity and is important for cell proliferation and differentiation. In this Review, we discuss the roles of APA in diverse cellular processes, including mRNA metabolism, protein diversification and protein localization, and more generally in gene regulation. We also discuss the molecular mechanisms underlying APA, such as variation in the concentration of core processing factors and RNA-binding proteins, as well as transcription-based regulation.
引用
收藏
页码:18 / 30
页数:13
相关论文
共 178 条
[81]   Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3′ end processing and splicing [J].
Kyburz, Andrea ;
Friedlein, Arno ;
Langen, Hanno ;
Keller, Walter .
MOLECULAR CELL, 2006, 23 (02) :195-205
[82]   Fip1 regulates mRNA alternative polyadenylation to promote stem cell self-renewal [J].
Lackford, Brad ;
Yao, Chengguo ;
Charles, Georgette M. ;
Weng, Lingjie ;
Zheng, Xiaofeng ;
Choi, Eun-A ;
Xie, Xiaohui ;
Wan, Ji ;
Xing, Yi ;
Freudenberg, Johannes M. ;
Yang, Pengyi ;
Jothi, Raja ;
Hu, Guang ;
Shi, Yongsheng .
EMBO JOURNAL, 2014, 33 (08) :878-889
[83]   Systematic Analysis of Cis-Elements in Unstable mRNAs Demonstrates that CUGBP1 Is a Key Regulator of mRNA Decay in Muscle Cells [J].
Lee, Jerome E. ;
Lee, Ju Youn ;
Wilusz, Jeffrey ;
Tian, Bin ;
Wilusz, Carol J. .
PLOS ONE, 2010, 5 (06)
[84]   Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes [J].
Lee, Ju Youn ;
Ji, Zhe ;
Tian, Bin .
NUCLEIC ACIDS RESEARCH, 2008, 36 (17) :5581-5590
[85]   Hexanucleotide Repeats in ALS/FTD Form Length-Dependent RNA Foci, Sequester RNA Binding Proteins, and Are Neurotoxic [J].
Lee, Youn-Bok ;
Chen, Han-Jou ;
Peres, Joao N. ;
Gomez-Deza, Jorge ;
Attig, Jan ;
Stalekar, Maja ;
Troakes, Claire ;
Nishimura, Agnes L. ;
Scotter, Emma L. ;
Vance, Caroline ;
Adachi, Yoshitsugu ;
Sardone, Valentina ;
Miller, Jack W. ;
Smith, Bradley N. ;
Gallo, Jean-Marc ;
Ule, Jernej ;
Hirth, Frank ;
Rogelj, Boris ;
Houart, Corinne ;
Shaw, Christopher E. .
CELL REPORTS, 2013, 5 (05) :1178-1186
[86]   Alternative cleavage and polyadenylation in spermatogenesis connects chromatin regulation with post-transcriptional control [J].
Li, Wencheng ;
Park, Ji Yeon ;
Zheng, Dinghai ;
Hoque, Mainul ;
Yehia, Ghassan ;
Tian, Bin .
BMC BIOLOGY, 2016, 14
[87]   Systematic Profiling of Poly(A) plus Transcripts Modulated by Core 3′ End Processing and Splicing Factors Reveals Regulatory Rules of Alternative Cleavage and Polyadenylation [J].
Li, Wencheng ;
You, Bei ;
Hoque, Mainul ;
Zheng, Dinghai ;
Luo, Wenting ;
Ji, Zhe ;
Park, Ji Yeon ;
Gunderson, Samuel I. ;
Kalsotra, Auinash ;
Manley, James L. ;
Tian, Bin .
PLOS GENETICS, 2015, 11 (04)
[88]   Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression [J].
Lianoglou, Steve ;
Garg, Vidur ;
Yang, Julie L. ;
Leslie, Christina S. ;
Mayr, Christine .
GENES & DEVELOPMENT, 2013, 27 (21) :2380-2396
[89]   HITS-CLIP yields genome-wide insights into brain alternative RNA processing [J].
Licatalosi, Donny D. ;
Mele, Aldo ;
Fak, John J. ;
Ule, Jernej ;
Kayikci, Melis ;
Chi, Sung Wook ;
Clark, Tyson A. ;
Schweitzer, Anthony C. ;
Blume, John E. ;
Wang, Xuning ;
Darnell, Jennifer C. ;
Darnell, Robert B. .
NATURE, 2008, 456 (7221) :464-U22
[90]   Converging Mechanisms in ALS and FTD: Disrupted RNA and Protein Homeostasis [J].
Ling, Shuo-Chien ;
Polymenidou, Magdalini ;
Cleveland, Don W. .
NEURON, 2013, 79 (03) :416-438