Alternative polyadenylation of mRNA precursors

被引:784
作者
Tian, Bin [1 ]
Manley, James L. [2 ]
机构
[1] Rutgers State Univ, New Jersey Med Sch, Dept Microbiol Biochem & Mol Genet, Newark, NJ 07103 USA
[2] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
基金
美国国家卫生研究院;
关键词
CLEAVAGE FACTOR-I; 3' UNTRANSLATED REGIONS; GENOME-WIDE ANALYSIS; LARGE-SCALE ANALYSIS; POLY(A) TAIL LENGTH; POLYMERASE-II; GENE-EXPRESSION; SR PROTEINS; INTRONIC CLEAVAGE; BINDING PROTEINS;
D O I
10.1038/nrm.2016.116
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Alternative polyadenylation (APA) is an RNA-processing mechanism that generates distinct 3' termini on mRNAs and other RNA polyrnerase II transcripts. It is widespread across all eukaryotic species and is recognized as a major mechanism of gene regulation. APA exhibits tissue specificity and is important for cell proliferation and differentiation. In this Review, we discuss the roles of APA in diverse cellular processes, including mRNA metabolism, protein diversification and protein localization, and more generally in gene regulation. We also discuss the molecular mechanisms underlying APA, such as variation in the concentration of core processing factors and RNA-binding proteins, as well as transcription-based regulation.
引用
收藏
页码:18 / 30
页数:13
相关论文
共 178 条
  • [31] Differential use of signal peptides and membrane domains is a common occurrence in the protein output of transcriptional units
    Davis, Melissa J.
    Hanson, Kelly A.
    Clark, Francis
    Fink, J. Lynn
    Zhang, Fasheng
    Kasukawa, Takeya
    Kai, Chikatoshi
    Kawai, Jun
    Carninci, Piero
    Hayashizaki, Yoshihide
    Teasdale, Rohan D.
    [J]. PLOS GENETICS, 2006, 2 (04): : 554 - 563
  • [32] Poly(A) binding protein nuclear 1 levels affect alternative polyadenylation
    de Klerk, Eleonora
    Venema, Andrea
    Anvar, S. Yahya
    Goeman, Jelle J.
    Hu, OuHua
    Trollet, Capucine
    Dickson, George
    den Dunnen, Johan T.
    van der Maarel, Silvere M.
    Raz, Vered
    't Hoen, Peter A. C.
    [J]. NUCLEIC ACIDS RESEARCH, 2012, 40 (18) : 9089 - 9101
  • [33] A quantitative atlas of polyadenylation in five mammals
    Derti, Adnan
    Garrett-Engele, Philip
    MacIsaac, Kenzie D.
    Stevens, Richard C.
    Sriram, Shreedharan
    Chen, Ronghua
    Rohl, Carol A.
    Johnson, Jason M.
    Babak, Tomas
    [J]. GENOME RESEARCH, 2012, 22 (06) : 1173 - 1183
  • [34] Intronic cleavage and polyadenylation regulates gene expression during DNA damage response through U1 snRNA
    Devany, Emral
    Park, Ji Yeon
    Murphy, Michael R.
    Zakusilo, George
    Baquero, Jorge
    Zhang, Xiaokan
    Hoque, Mainul
    Tian, Bin
    Kleiman, Frida E.
    [J]. CELL DISCOVERY, 2016, 2
  • [35] RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3′ UTRs
    Di Giammartino, Dafne Campigli
    Li, Wencheng
    Ogami, Koichi
    Yashinskie, Jossie J.
    Hoque, Mainul
    Tian, Bin
    Manley, James L.
    [J]. GENES & DEVELOPMENT, 2014, 28 (20) : 2248 - 2260
  • [36] Mechanisms and Consequences of Alternative Polyadenylation
    Di Giammartino, Dafne Campigli
    Nishida, Kensei
    Manley, James L.
    [J]. MOLECULAR CELL, 2011, 43 (06) : 853 - 866
  • [37] Landscape of transcription in human cells
    Djebali, Sarah
    Davis, Carrie A.
    Merkel, Angelika
    Dobin, Alex
    Lassmann, Timo
    Mortazavi, Ali
    Tanzer, Andrea
    Lagarde, Julien
    Lin, Wei
    Schlesinger, Felix
    Xue, Chenghai
    Marinov, Georgi K.
    Khatun, Jainab
    Williams, Brian A.
    Zaleski, Chris
    Rozowsky, Joel
    Roeder, Maik
    Kokocinski, Felix
    Abdelhamid, Rehab F.
    Alioto, Tyler
    Antoshechkin, Igor
    Baer, Michael T.
    Bar, Nadav S.
    Batut, Philippe
    Bell, Kimberly
    Bell, Ian
    Chakrabortty, Sudipto
    Chen, Xian
    Chrast, Jacqueline
    Curado, Joao
    Derrien, Thomas
    Drenkow, Jorg
    Dumais, Erica
    Dumais, Jacqueline
    Duttagupta, Radha
    Falconnet, Emilie
    Fastuca, Meagan
    Fejes-Toth, Kata
    Ferreira, Pedro
    Foissac, Sylvain
    Fullwood, Melissa J.
    Gao, Hui
    Gonzalez, David
    Gordon, Assaf
    Gunawardena, Harsha
    Howald, Cedric
    Jha, Sonali
    Johnson, Rory
    Kapranov, Philipp
    King, Brandon
    [J]. NATURE, 2012, 489 (7414) : 101 - 108
  • [38] THOC5 controls 3′end- processing of immediate early genes via interaction with polyadenylation specific factor 100 (CPSF100)
    Doan Duy Hai Tran
    Saran, Shashank
    Williamson, Andrew J. K.
    Pierce, Andrew
    Dittrich-Breiholz, Oliver
    Wiehlmann, Lutz
    Koch, Alexandra
    Whetton, Anthony D.
    Tamura, Teruko
    [J]. NUCLEIC ACIDS RESEARCH, 2014, 42 (19) : 12249 - 12260
  • [39] Control of poly(A) tail length
    Eckmann, Christian R.
    Rammelt, Christiane
    Wahle, Elmar
    [J]. WILEY INTERDISCIPLINARY REVIEWS-RNA, 2011, 2 (03) : 348 - 361
  • [40] Alternative poly(A) site selection in complex transcription units: Means to an end?
    EdwaldsGilbert, G
    Veraldi, KL
    Milcarek, C
    [J]. NUCLEIC ACIDS RESEARCH, 1997, 25 (13) : 2547 - 2561