Alternative polyadenylation of mRNA precursors

被引:826
作者
Tian, Bin [1 ]
Manley, James L. [2 ]
机构
[1] Rutgers State Univ, New Jersey Med Sch, Dept Microbiol Biochem & Mol Genet, Newark, NJ 07103 USA
[2] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
基金
美国国家卫生研究院;
关键词
CLEAVAGE FACTOR-I; 3' UNTRANSLATED REGIONS; GENOME-WIDE ANALYSIS; LARGE-SCALE ANALYSIS; POLY(A) TAIL LENGTH; POLYMERASE-II; GENE-EXPRESSION; SR PROTEINS; INTRONIC CLEAVAGE; BINDING PROTEINS;
D O I
10.1038/nrm.2016.116
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Alternative polyadenylation (APA) is an RNA-processing mechanism that generates distinct 3' termini on mRNAs and other RNA polyrnerase II transcripts. It is widespread across all eukaryotic species and is recognized as a major mechanism of gene regulation. APA exhibits tissue specificity and is important for cell proliferation and differentiation. In this Review, we discuss the roles of APA in diverse cellular processes, including mRNA metabolism, protein diversification and protein localization, and more generally in gene regulation. We also discuss the molecular mechanisms underlying APA, such as variation in the concentration of core processing factors and RNA-binding proteins, as well as transcription-based regulation.
引用
收藏
页码:18 / 30
页数:13
相关论文
共 178 条
[161]   Molecular Mechanisms of Long Noncoding RNAs [J].
Wang, Kevin C. ;
Chang, Howard Y. .
MOLECULAR CELL, 2011, 43 (06) :904-914
[162]   Retrotransposons and pseudogenes regulate mRNAs and IncRNAs via the piRNA pathway in the germline [J].
Watanabe, Toshiaki ;
Cheng, Ee-chun ;
Zhong, Mei ;
Lin, Haifan .
GENOME RESEARCH, 2015, 25 (03) :368-380
[163]   Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3′- UTR landscape across seven tumour types [J].
Xia, Zheng ;
Donehower, Lawrence A. ;
Cooper, Thomas A. ;
Neilson, Joel R. ;
Wheeler, David A. ;
Wagner, Eric J. ;
Li, Wei .
NATURE COMMUNICATIONS, 2014, 5
[164]   The structure of human cleavage factor Im hints at functions beyond UGUA-specific RNA binding A role in alternative polyadenylation and a potential link to 5′ capping and splicing [J].
Yang, Qin ;
Gilmartin, Gregory M. ;
Doublie, Sylvie .
RNA BIOLOGY, 2011, 8 (05) :748-753
[165]   Structural basis of UGUA recognition by the Nudix protein CFIm25 and implications for a regulatory role in mRNA 3′ processing [J].
Yang, Qin ;
Gilmartin, Gregory M. ;
Doublie, Sylvie .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2010, 107 (22) :10062-10067
[166]   PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation [J].
Yang, Yan ;
Li, Wencheng ;
Hoque, Mainul ;
Hou, Liming ;
Shen, Steven ;
Tian, Bin ;
Dynlacht, Brian D. .
PLOS GENETICS, 2016, 12 (01)
[167]   Overlapping and distinct functions of CstF64 and CstF64τ in mammalian mRNA 3′ processing [J].
Yao, Chengguo ;
Choi, Eun-A ;
Weng, Lingjie ;
Xie, Xiaohui ;
Wan, Ji ;
Xing, Yi ;
Moresco, James J. ;
Tu, Patricia G. ;
Yates, John R., III ;
Shi, Yongsheng .
RNA, 2013, 19 (12) :1781-1790
[168]   Coding Region Polyadenylation Generates a Truncated tRNA Synthetase that Counters Translation Repression [J].
Yao, Peng ;
Potdar, Alka A. ;
Arif, Abul ;
Ray, Partho Sarothi ;
Mukhopadhyay, Rupak ;
Willard, Belinda ;
Xu, Yichi ;
Yan, Jun ;
Saidel, Gerald M. ;
Fox, Paul L. .
CELL, 2012, 149 (01) :88-100
[169]   Specific transcriptional pausing activates polyadenylation in a coupled in vitro system [J].
Yonaha, M ;
Proudfoot, NJ .
MOLECULAR CELL, 1999, 3 (05) :593-600
[170]   RNA recognition by the human polyadenylation factor CstF [J].
Yoshio, TD ;
Manley, JL .
MOLECULAR AND CELLULAR BIOLOGY, 1997, 17 (07) :3907-3914