Single-Cell Genomics

被引:47
|
作者
Paolillo, Carmela [1 ]
Londin, Eric [2 ]
Fortina, Paolo [3 ,4 ]
机构
[1] Univ Penn, Perelman Sch Med, Dept Clin Pathol & Lab Med Idne, Div Precis & Computat Diagnost, Philadelphia, PA 19104 USA
[2] Thomas Jefferson Univ, Computat Med Ctr, Sidney Kimmel Med Coll, Philadelphia, PA 19107 USA
[3] Thomas Jefferson Univ, Dept Canc Biol, Sidney Kimmel Med Coll, Philadelphia, PA 19107 USA
[4] Sapienza Univ, Dept Mol Med, Rome, Italy
关键词
CIRCULATING TUMOR-CELLS; MESSENGER-RNA-SEQ; CLONAL EVOLUTION; STEM-CELLS; ANTIGEN; REVEALS; HETEROGENEITY; EXPRESSION; POPULATIONS; CIRCUITS;
D O I
10.1373/clinchem.2017.283895
中图分类号
R446 [实验室诊断]; R-33 [实验医学、医学实验];
学科分类号
1001 ;
摘要
BACKGROUND: Single-cell genomics is an approach to investigate cell heterogeneity and to identify new molecular features correlated with clinical outcomes. This approach allows identification of the complexity of cell diversity in a sample without the loss of information that occurs when multicellular or bulk tissue samples are analyzed. CONTENT: The first single-cell RNA-sequencing study was published in 2009, and since then many more studies and single-cell sequencing methods have been published. These studies have had a major impact on several fields, including microbiology, neurobiology, cancer, and developmental biology. Recently, improvements in reliability and the development of commercial single-cell isolation platforms are opening the potential of this technology to the clinical laboratory. SUMMARY: In this review we provide an overview of the current state of single-cell genomics. We describe opportunities in clinical research and medical applications. (C) 2019 American Association for Clinical Chemistry
引用
收藏
页码:972 / 985
页数:14
相关论文
共 50 条
  • [31] CellTag Indexing: genetic barcode-based sample multiplexing for single-cell genomics
    Guo, Chuner
    Kong, Wenjun
    Kamimoto, Kenji
    Rivera-Gonzalez, Guillermo C.
    Yang, Xue
    Kirita, Yuhei
    Morris, Samantha A.
    GENOME BIOLOGY, 2019, 20 (1)
  • [32] Cancer genomics: one cell at a time
    Navin, Nicholas E.
    GENOME BIOLOGY, 2014, 15 (08): : 452
  • [33] Single-Cell Genomics: Approaches and Utility in Immunology
    Neu, Karlynn E.
    Tang, Qingming
    Wilson, Patrick C.
    Khan, Aly A.
    TRENDS IN IMMUNOLOGY, 2017, 38 (02) : 140 - 149
  • [34] Tagmentation-based single-cell genomics
    Adey, Andrew C.
    GENOME RESEARCH, 2021, 31 (10) : 1693 - 1705
  • [35] Single-Cell Sequencing Technology in Oncology: Applications for Clinical Therapies and Research
    Ye, Baixin
    Gao, Qingping
    Zeng, Zhi
    Stary, Creed M.
    Jian, Zhihong
    Xiong, Xiaoxing
    Gu, Lijuan
    ANALYTICAL CELLULAR PATHOLOGY, 2016, 2016 : 1 - 8
  • [36] Computational modelling in single-cell cancer genomics: methods and future directions
    Zhang, Allen W.
    Campbell, Kieran R.
    PHYSICAL BIOLOGY, 2020, 17 (06)
  • [37] Advances and Applications of Single-Cell Sequencing Technologies
    Wang, Yong
    Navin, Nicholas E.
    MOLECULAR CELL, 2015, 58 (04) : 598 - 609
  • [38] Implementation and validation of single-cell genomics experiments in neuroscience
    Colonna, Marco
    Konopka, Genevieve
    Liddelow, Shane A.
    Nowakowski, Tomasz
    Awatramani, Rajeshwar
    Bateup, Helen S.
    Cadwell, Cathryn R.
    Caglayan, Emre
    Chen, Jerry L.
    Gillis, Jesse
    Kampmann, Martin
    Krienen, Fenna
    Marsh, Samuel E.
    Monje, Michelle
    O'Dea, Michael R.
    Patani, Rickie
    Pollen, Alex A.
    Quintana, Francisco J.
    Scavuzzo, Marissa
    Schmitz, Matthew
    Sloan, Steven A.
    Tesar, Paul J.
    Tollkuhn, Jessica
    Tosches, Maria Antonietta
    Urbanek, Madeleine E.
    Werner, Jonathan M.
    Bayraktar, Omer A.
    Gokce, Ozgun
    Habib, Naomi
    NATURE NEUROSCIENCE, 2024, 27 (12) : 2310 - 2325
  • [39] Resolving medulloblastoma cellular architecture by single-cell genomics
    Hovestadt, Volker
    Smith, Kyle S.
    Bihannic, Laure
    Filbin, Mariella G.
    Shaw, McKenzie L.
    Baumgartner, Alicia
    DeWitt, John C.
    Groves, Andrew
    Mayr, Lisa
    Weisman, Hannah R.
    Richman, Alyssa R.
    Shore, Marni E.
    Goumnerova, Liliana
    Rosencrance, Celeste
    Carter, Robert A.
    Phoenix, Timothy N.
    Hadley, Jennifer L.
    Tong, Yiai
    Houston, Jim
    Ashmun, Richard A.
    DeCuypere, Michael
    Sharma, Tanvi
    Flasch, Diane
    Silkov, Antonina
    Ligon, Keith L.
    Pomeroy, Scott L.
    Rivera, Miguel N.
    Rozenblatt-Rosen, Orit
    Rusert, Jessica M.
    Wechsler-Reya, Robert J.
    Li, Xiao-Nan
    Peyrl, Andreas
    Gojo, Johannes
    Kirchhofer, Dominik
    Loetsch, Daniela
    Czech, Thomas
    Dorfer, Christian
    Haberler, Christine
    Geyeregger, Rene
    Halfmann, Angela
    Gawad, Charles
    Easton, John
    Pfister, Stefan M.
    Regev, Aviv
    Gajjar, Amar
    Orr, Brent A.
    Slavc, Irene
    Robinson, Giles W.
    Bernstein, Bradley E.
    Suva, Mario L.
    NATURE, 2019, 572 (7767) : 74 - +
  • [40] Single-Cell Genomics for Investigating Pathogenesis of Inflammatory Diseases
    Jung, Seyoung
    Lee, Jeong Seok
    MOLECULES AND CELLS, 2023, 46 (02) : 120 - 129