What can be done with a good crystal and an accurate beamline?

被引:34
作者
Wang, Jiawei
Dauter, Miroslawa
Dauter, Zbigniew [1 ]
机构
[1] NCI, Synchrotron Radiat Res Sect, MCL, Argonne Natl Lab, Argonne, IL 60439 USA
[2] SAIC Frederick Inc, Basic Res Program, Argonne Natl Lab, Argonne, IL 60439 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2006年 / 62卷
关键词
D O I
10.1107/S0907444906038534
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
X-ray single-wavelength anomalous diffraction (SAD) data from a crystal of proteinase K were collected using synchrotron radiation of 0.98 angstrom wavelength at SER-CAT 22-ID beamline, Advanced Photon Source, Argonne National Laboratory. At this wavelength, the expected Bijvoet ratio resulting from the presence of one calcium, one chloride and ten S atoms in the 279-residue protein is extremely small at similar to 0.46%. The direct-methods program SHELXD located 11 anomalous sites using data truncated to 2 A resolution. SHELXE was used to produce an easily interpretable electron-density map. This study shows that an accurate beamline and a good-quality crystal provide the possibility of successfully using a very weak anomalous signal of sulfur measured at a short wavelength for phasing a protein structure, even if a small degree of radiation damage is present.
引用
收藏
页码:1475 / 1483
页数:9
相关论文
共 38 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   REEVALUATION OF X-RAY ATOMIC ENERGY LEVELS [J].
BEARDEN, JA ;
BURR, AF .
REVIEWS OF MODERN PHYSICS, 1967, 39 (01) :125-&
[3]   Structure of a serine protease proteinase K from Tritirachium album limber at 0.98 Å resolution [J].
Betzel, C ;
Gourinath, S ;
Kumar, P ;
Kaur, P ;
Perbandt, M ;
Eschenburg, S ;
Singh, TP .
BIOCHEMISTRY, 2001, 40 (10) :3080-3088
[4]  
Blundell T. L., 1976, Protein crystallography
[5]   Novel approach to phasing proteins: derivatization by short cryo-soaking with halides [J].
Dauter, Z ;
Dauter, M ;
Rajashankar, KR .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2000, 56 :232-237
[6]   Jolly SAD [J].
Dauter, Z ;
Dauter, M ;
Dodson, E .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2002, 58 :494-506
[7]   Data-collection strategies [J].
Dauter, Z .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1999, 55 :1703-1717
[8]   Estimation of anomalous signal in diffraction data [J].
Dauter, Zbigniew .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 :867-876
[9]  
Delano WL., 2002, The PyMOL Molecular Graphics System
[10]   Some aspects of quantitative analysis and correction of radiation damage [J].
Diederichs, K .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2006, 62 :96-101