Comparative genomics at the vertebrate extremes

被引:193
作者
Boffelli, D
Nobrega, MA
Rubin, EM [1 ]
机构
[1] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Lab, Genom Div, Berkeley, CA 94720 USA
关键词
D O I
10.1038/nrg1350
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Annotators of the human genome are increasingly exploiting comparisons with genomes at both the distal and proximal evolutionary edges of the vertebrate tree. Despite the sequence similarity between primates, comparisons among members of this clade are beginning to identify primate-as well as human-specific functional elements. At the distal evolutionary extreme, comparing the human genome to that of non-mammal vertebrates such as fish has proved to be a powerful filter to prioritize sequences that most probably have significant functional activity in all vertebrates.
引用
收藏
页码:456 / 465
页数:10
相关论文
共 86 条
[81]   Rapid evolution of male reproductive genes in the descent of man [J].
Wyckoff, GJ ;
Wang, W ;
Wu, CI .
NATURE, 2000, 403 (6767) :304-309
[82]   Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models [J].
Yang, ZH ;
Nielsen, R .
MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (01) :32-43
[83]  
Yang ZH, 1997, COMPUT APPL BIOSCI, V13, P555
[84]  
Yu N, 2002, GENETICS, V161, P269
[85]   A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain [J].
Zerucha, T ;
Stühmer, T ;
Hatch, G ;
Park, BK ;
Long, QM ;
Yu, GY ;
Gambarotta, A ;
Schultz, JR ;
Rubenstein, JLR ;
Ekker, M .
JOURNAL OF NEUROSCIENCE, 2000, 20 (02) :709-721
[86]   Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey [J].
Zhang, JZ ;
Zhang, YP ;
Rosenberg, HF .
NATURE GENETICS, 2002, 30 (04) :411-415