GPU-accelerated constant pH and redox potential molecular dynamics with multidimensional replica exchange simulations in amber

被引:0
|
作者
Cruzeiro, Vinicius Wilian [1 ]
Roitberg, Adrian [1 ]
机构
[1] Univ Florida, Dept Chem, Gainesville, FL 32611 USA
关键词
D O I
暂无
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
249
引用
收藏
页数:1
相关论文
共 50 条
  • [1] GPU-accelerated constant pH and redox potential molecular dynamics: Exploring electrochemistry in AMBER
    Cruzeiro, Vinicius Wilian
    Roitberg, Adrian
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [2] Multidimensional Replica Exchange Simulations for Efficient Constant pH and Redox Potential Molecular Dynamics
    Cruzeiro, Vinicius Wilian D.
    Roitberg, Adrian E.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2019, 15 (02) : 871 - 881
  • [3] Efficient constant pH and redox potential molecular dynamics with multidimensional replica exchange simulations
    Cruzeiro, Vinicius Wilian
    Roitberg, Adrian
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 256
  • [4] Redox potential replica exchange molecular dynamics at constant pH in AMBER: implementation and validation
    Cruzeiro, Vinicius Wilian D.
    Amaral, Marcos S.
    Roitberg, Adrian E.
    JOURNAL OF CHEMICAL PHYSICS, 2018, 149 (07):
  • [5] GPU-Accelerated Implementation of Continuous Constant pH Molecular Dynamics in Amber: pKa Predictions with Single-pH Simulations
    Harris, Robert C.
    Shen, Jana
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2019, 59 (11) : 4821 - 4832
  • [6] Applications of GPU-accelerated replica exchange molecular dynamic simulations of proteins
    Wang, Kai
    Shirts, Michael R.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 244
  • [7] Overcoming the sampling problem in force field evaluation via GPU-accelerated multidimensional replica exchange molecular dynamics
    Bergonzo, Christina
    Henriksen, Niel M.
    Roe, Daniel R.
    Swails, Jason M.
    Roitberg, Adrian E.
    Cheatham, Thomas E., III
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2014, 248
  • [8] High-performance multidimensional replica exchange molecular dynamics along pH, redox potential and temperature dimensions using AMBER
    Cruzeiro, Vinicius Wilian
    Roitberg, Adrian
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2018, 255
  • [9] GPU-Accelerated All-Atom Particle-Mesh Ewald Continuous Constant pH Molecular Dynamics in Amber br
    Harris, Julie A.
    Liu, Ruibin
    de Oliveira, Vinicius Martins
    Vazquez-Montelongo, Erik Antonio
    Henderson, Jack A.
    Shen, Jana
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2022, 18 (12) : 7510 - 7527
  • [10] Identifying ligand binding sites and poses using GPU-accelerated Hamiltonian replica exchange molecular dynamics
    Kai Wang
    John D. Chodera
    Yanzhi Yang
    Michael R. Shirts
    Journal of Computer-Aided Molecular Design, 2013, 27 : 989 - 1007