In silico analysis of Clostridium acetobutylicum ATCC 824 metabolic response to an external electron supply

被引:8
作者
Gallardo, Roberto [1 ]
Acevedo, Alejandro [1 ]
Quintero, Julian [1 ]
Paredes, Ivan [1 ]
Conejeros, Raul [1 ]
Aroca, German [1 ]
机构
[1] Pontificia Univ Catolica Valparaiso, Escuela Ingn Bioquim, Av Brasil, Valparaiso 2085, Chile
关键词
Clostridium acetobutylicum; Butanol; Available reducing capacity; Electron supply; Flux balance analysis; GENOME-SCALE MODEL; BUTANOL PRODUCTION; METHYL VIOLOGEN; TRANSCRIPTIONAL ANALYSIS; SOLVENT PRODUCTION; CHEMOSTAT CULTURE; BUTYRATE; ACID; FERMENTATION; MODULATION;
D O I
10.1007/s00449-015-1513-5
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The biological production of butanol has become an important research field and thanks to genome sequencing and annotation; genome-scale metabolic reconstructions have been developed for several Clostridium species. This work makes use of the iCAC490 model of Clostridium acetobutylicum ATCC 824 to analyze its metabolic capabilities and response to an external electron supply through a constraint-based approach using the Constraint-Based Reconstruction Analysis Toolbox. Several analyses were conducted, which included sensitivity, production envelope, and phenotypic phase planes. The model showed that the use of an external electron supply, which acts as co-reducing agent along with glucose-derived reducing power (electrofermentation), results in an increase in the butanol-specific productivity. However, a proportional increase in the butyrate uptake flux is required. Besides, the uptake of external butyrate leads to the coupling of butanol production and growth, which coincides with results reported in literature. Phenotypic phase planes showed that the reducing capacity becomes more limiting for growth at high butyrate uptake fluxes. An electron uptake flux allows the metabolism to reach the growth optimality line. Although the maximum butanol flux does not coincide with the growth optimality line, a butyrate uptake combined with an electron uptake flux would result in an increased butanol volumetric productivity, being a potential strategy to optimize the production of butanol by C. acetobutylicum ATCC 824.
引用
收藏
页码:295 / 305
页数:11
相关论文
共 57 条
[1]   Transcriptional analysis of spo0A overexpression in Clostridium acetobutylicum and its effect on the cell's response to butanol stress [J].
Alsaker, KV ;
Spitzer, TR ;
Papoutsakis, ET .
JOURNAL OF BACTERIOLOGY, 2004, 186 (07) :1959-1971
[2]   Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium acetobutylicum [J].
Amador-Noguez, Daniel ;
Feng, Xiao-Jiang ;
Fan, Jing ;
Roquet, Nathaniel ;
Rabitz, Herschel ;
Rabinowitz, Joshua D. .
JOURNAL OF BACTERIOLOGY, 2010, 192 (17) :4452-4461
[3]   Electricity-driven metabolic shift through direct electron uptake by electroactive heterotroph Clostridium pasteurianum [J].
Choi, Okkyoung ;
Kim, Taeyeon ;
Woo, Han Min ;
Um, Youngsoon .
SCIENTIFIC REPORTS, 2014, 4
[4]   Butyrate production enhancement by Clostridium tyrobutyricum using electron mediators and a cathodic electron donor [J].
Choi, Okkyoung ;
Um, Youngsoon ;
Sang, Byoung-In .
BIOTECHNOLOGY AND BIOENGINEERING, 2012, 109 (10) :2494-2502
[5]   Metabolic Flux Analysis Elucidates the Importance of the Acid-Formation Pathways in Regulating Solvent Production by Clostridium acetobutylicum [J].
Desai, Ruchir P. ;
Harris, Latonia M. ;
Welker, Neil E. ;
Papoutsakis, Eleftherios T. .
METABOLIC ENGINEERING, 1999, 1 (03) :206-213
[6]  
Duerre Peter, 2007, Biotechnology Journal, V2, P1525, DOI 10.1002/biot.200700168
[7]   Engineering microbes for tolerance to next-generation biofuels [J].
Dunlop, Mary J. .
BIOTECHNOLOGY FOR BIOFUELS, 2011, 4
[8]   Characterizing the metabolic phenotype: A phenotype phase plane analysis [J].
Edwards, JS ;
Ramakrishna, R ;
Palsson, BO .
BIOTECHNOLOGY AND BIOENGINEERING, 2002, 77 (01) :27-36
[9]   Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms [J].
Ezeji, Thaddeus ;
Milne, Caroline ;
Price, Nathan D. ;
Blaschek, Hans P. .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2010, 85 (06) :1697-1712
[10]   Metabolite analysis of Clostridium acetobutylicum: Fermentation in a microbial fuel cell [J].
Finch, Amethist S. ;
Mackie, Timothy D. ;
Sund, Christian J. ;
Sumner, James J. .
BIORESOURCE TECHNOLOGY, 2011, 102 (01) :312-315