Novel intergenic repeats of Escherichia coli K-12

被引:51
作者
Rudd, KE [1 ]
机构
[1] Univ Miami, Sch Med, Dept Biochem & Mol Biol, Miami, FL 33101 USA
关键词
repetitive sequence; genome; bacterial; database;
D O I
10.1016/S0923-2508(99)00126-6
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
An online catalog of intergenic DNA repeat sequence elements is added to the EcoGene Escherichia coli K-12 genome sequence annotation and analysis project (bmb.med.miami.edu/EcoGene). A library of noncoding (intergenic) DNA sequences depleted of known intergenic repeat classes was searched for DNA sequence similarities to identify novel DNA repeat sequence classes. (C) 1999 Editions scientifiques et medicales Elsevier SAS.
引用
收藏
页码:653 / 664
页数:12
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