Genomics and proteomics tools for compound mode-of-action studies in drug discovery

被引:12
作者
Kley, N
Ivanov, I
Meier-Ewert, S
机构
[1] GPC Bitoech Inc, Waltham, MA 02451 USA
[2] GPC Biotech AG, D-82152 Martinsried, Germany
关键词
chemical biology; chemical genetics; gene expression; molecular interaction; mode of action; pharmacogenomics; pharmacoproteomics; small molecule drugs;
D O I
10.1517/14622416.5.4.395
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
A broad range of genomics and proteomics technologies are increasingly being integrated into emerging research fields such as pharmacogenomics, pharmacoproteomics, chemogenomics, chemical genetics, and chemical biology. Here we review applications of genomic and proteomic technologies to drug mechanism-of-action studies and how these are beginning to impact the drug discovery process.
引用
收藏
页码:395 / 404
页数:10
相关论文
共 83 条
  • [1] Chemical strategies for functional proteomics
    Adam, GC
    Sorensen, EJ
    Cravatt, BF
    [J]. MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (10) : 781 - 790
  • [2] Mass spectrometry-based proteomics
    Aebersold, R
    Mann, M
    [J]. NATURE, 2003, 422 (6928) : 198 - 207
  • [3] Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
    Alizadeh, AA
    Eisen, MB
    Davis, RE
    Ma, C
    Lossos, IS
    Rosenwald, A
    Boldrick, JG
    Sabet, H
    Tran, T
    Yu, X
    Powell, JI
    Yang, LM
    Marti, GE
    Moore, T
    Hudson, J
    Lu, LS
    Lewis, DB
    Tibshirani, R
    Sherlock, G
    Chan, WC
    Greiner, TC
    Weisenburger, DD
    Armitage, JO
    Warnke, R
    Levy, R
    Wilson, W
    Grever, MR
    Byrd, JC
    Botstein, D
    Brown, PO
    Staudt, LM
    [J]. NATURE, 2000, 403 (6769) : 503 - 511
  • [4] Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    Alon, U
    Barkai, N
    Notterman, DA
    Gish, K
    Ybarra, S
    Mack, D
    Levine, AJ
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (12) : 6745 - 6750
  • [5] A three-hybrid approach to scanning the proteome for targets of small molecule kinase inhibitors
    Becker, F
    Murthi, K
    Smith, C
    Come, J
    Costa-Roldán, N
    Kaufmann, C
    Hanke, U
    Degenhart, C
    Baumann, S
    Wallner, W
    Huber, A
    Dedier, S
    Dill, S
    Kinsman, D
    Hediger, M
    Bockovich, N
    Meier-Ewert, S
    Kluge, AF
    Kley', N
    [J]. CHEMISTRY & BIOLOGY, 2004, 11 (02): : 211 - 223
  • [6] Pharmacogenomic analysis: Correlating molecular substructure classes with microarray gene expression data
    Blower P.E.
    Yang C.
    Fligner M.A.
    Verducci J.S.
    Yu L.
    Richman S.
    Weinstein J.N.
    [J]. The Pharmacogenomics Journal, 2002, 2 (4) : 259 - 271
  • [7] Chemistry-based functional proteomics reveals novel members of the deubiquitinating enzyme
    Borodovsky, A
    Ovaa, H
    Kolli, N
    Gan-Erdene, T
    Wilkinson, KD
    Ploegh, HL
    Kessler, BM
    [J]. CHEMISTRY & BIOLOGY, 2002, 9 (10): : 1149 - 1159
  • [8] The use and analysis of microarray data
    Butte, A
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2002, 1 (12) : 951 - 960
  • [9] Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
    Butte, AJ
    Tamayo, P
    Slonim, D
    Golub, TR
    Kohane, IS
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (22) : 12182 - 12186
  • [10] Model systems in drug discovery: chemical genetics meets genomics
    Carroll, PM
    Dougherty, B
    Ross-Macdonald, P
    Browman, K
    FitzGerald, K
    [J]. PHARMACOLOGY & THERAPEUTICS, 2003, 99 (02) : 183 - 220