Development and Validation of a Seven-Gene Signature for Predicting the Prognosis of Lung Adenocarcinoma

被引:9
|
作者
Zhang, Yingqing [1 ]
Zhang, Xiaoping [2 ]
Lv, Xiaodong [1 ]
Zhang, Ming [1 ]
Gao, Xixi [1 ]
Liu, Jialiang [1 ]
Xu, Yufen [3 ]
Fang, Zhixian [1 ]
Chen, Wenyu [1 ]
机构
[1] Jiaxing Univ, Hosp Jiaxing 1, Affiliated Hosp, Dept Respirat, Jiaxing 314000, Peoples R China
[2] Jiaxing Univ, Affiliated Hosp, Hosp Jiaxing 1, Dept Sci & Educ, Jiaxing 314000, Peoples R China
[3] Jiaxing Univ, Affiliated Hosp, Hosp Jiaxing 1, Dept Oncol, Jiaxing 314000, Peoples R China
关键词
PEPTIDASE; 8; CANCER; GENE; IDENTIFICATION; EXPRESSION; INDICATOR;
D O I
10.1155/2020/1836542
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background. Prognosis is a main factor affecting the survival of patients with lung adenocarcinoma (LUAD), yet no robust prognostic model of high effectiveness has been developed. This study is aimed at constructing a stable and practicable gene signature-based model via bioinformatics methods for predicting the prognosis of LUAD sufferers. Methods. The mRNA expression data were accessed from the TCGA-LUAD dataset, and paired clinical information was collected from the GDC website. R package "edgeR" was employed to select the differentially expressed genes (DEGs), which were then used for the construction of a gene signaturebased model via univariate COX, Lasso, and multivariate COX regression analyses. Kaplan-Meier and ROC survival analyses were conducted to comprehensively evaluate the performance of the model in predicting LUAD prognosis, and an independent dataset GSE26939 was accessed for further validation. Results. Totally, 1,655 DEGs were obtained, and a 7-gene signature-based risk score was developed and formulated as risk score = 0:000245 * NTSR1 + o7:13E - 05THORN * RHOV + 0:000505 * KLK8 + o7:01E - 05THORN * TNS4 + 0:000288 * C1QTNF6 + 0:00044 * IVL + 0:000161 * B4GALNT2. Kaplan-Meier survival curves revealed that the survival rate of patients in the high-risk group was lower in both the TCGA-LUAD dataset and GSE26939 relative to that of patients in the low-risk group. The relationship between the risk score and clinical characteristics was further investigated, finding that the model was effective in prognosis prediction in the patients with different age (age > 65, age < 65) and TNM stage (N0&N1, T1&T2, and tumor stage I/II). In sum, our study provides a robust predictive model for LUAD prognosis, which boosts the clinical research on LUAD and helps to explore the mechanism underlying the occurrence and progression of LUAD.
引用
收藏
页数:10
相关论文
共 50 条
  • [31] Establishing a Novel Gene Signature Related to Histone Modifications for Predicting Prognosis in Lung Adenocarcinoma
    Liu, Mengfeng
    Yu, Xiran
    Xu, Shidong
    Qu, Changfa
    JOURNAL OF ONCOLOGY, 2022, 2022
  • [32] A novel defined cuproptosis-related gene signature for predicting the prognosis of lung adenocarcinoma
    Zhang, Huizhe
    Shi, Yanchen
    Yi, Qing
    Wang, Cong
    Xia, Qingqing
    Zhang, Yufeng
    Jiang, Weilong
    Qi, Jia
    FRONTIERS IN GENETICS, 2022, 13
  • [33] Development and Validation of a 7-Gene Inflammatory Signature Forecasts Prognosis and Diverse Immune Landscape in Lung Adenocarcinoma
    Nai, Aitao
    Ma, Feng
    He, Zirui
    Zeng, Shuwen
    Bashir, Shoaib
    Song, Jian
    Xu, Meng
    FRONTIERS IN MOLECULAR BIOSCIENCES, 2022, 9
  • [34] Development and clinical validation of a necroptosis-related gene signature for prediction of prognosis and tumor immunity in lung adenocarcinoma
    Lei, Kai
    Tan, Binghua
    Liang, Ruihao
    Lyu, Yingcheng
    Wang, Kexi
    Wang, Wenjian
    Wang, Kefeng
    Hu, Xueting
    Wu, Duoguang
    Lin, Huayue
    Wang, Minghui
    AMERICAN JOURNAL OF CANCER RESEARCH, 2022, 12 (11): : 5160 - +
  • [35] Identification and validation of a novel angiogenesis-related gene signature for predicting prognosis in gastric adenocarcinoma
    Xu, Peipei
    Liu, Sailiang
    Song, Shu
    Yao, Xiang
    Li, Xuechuan
    Zhang, Jie
    Liu, Yinbing
    Zheng, Ye
    Gao, Ganglong
    Xu, Jingjing
    FRONTIERS IN ONCOLOGY, 2023, 12
  • [36] A novel seven-gene signature as Prognostic Biomarker in Hepatocellular Carcinoma
    Xie, Hui
    Liu, Shouping
    Zhang, Ziying
    Chen, Peng
    Tao, Yongguang
    JOURNAL OF CANCER, 2020, 11 (19): : 5768 - 5781
  • [37] A Robust Seven-Gene Signature Associated With Tumor Microenvironment to Predict Survival Outcomes of Patients With Stage III-IV Lung Adenocarcinoma
    Zhao, Hao
    Zhang, Xuening
    Guo, Lan
    Shi, Songhe
    Lu, Ciyong
    FRONTIERS IN GENETICS, 2021, 12
  • [38] Development and validation of an oxidative phosphorylation-related gene signature in lung adenocarcinoma
    Xu, Zihao
    Wu, Zilong
    Zhang, Jingtao
    Zhou, Ruihao
    Ye, Ling
    Yang, Pingliang
    Yu, Bentong
    EPIGENOMICS, 2020, 12 (15) : 1333 - 1348
  • [39] Identification of an Amino Acid Metabolism-Related Gene Signature for Predicting Prognosis in Lung Adenocarcinoma
    Chang, Wuguang
    Li, Hongmu
    Wu, Chun
    Zhong, Leqi
    Zhu, Tengfei
    Chang, Zenghao
    Ou, Wei
    Wang, Siyu
    GENES, 2022, 13 (12)
  • [40] Construction and analysis of a novel ferroptosis-related gene signature predicting prognosis in lung adenocarcinoma
    Zhou, Jing
    Wang, Xinyue
    Li, Zhaona
    Jiang, Richeng
    FEBS OPEN BIO, 2021, : 3005 - 3018