Deep coarse-grained potentials via relative entropy minimization

被引:20
|
作者
Thaler, Stephan [1 ]
Stupp, Maximilian [1 ]
Zavadlav, Julija [1 ,2 ,3 ]
机构
[1] Tech Univ Munich, TUM Sch Engineeringand Design, Dept Engn Phys & Computat, Multiscale Modeling Fluid Mat, Munich, Germany
[2] Tech Univ Munich, Munich Data Sci Inst, Munich, Germany
[3] Tech Univ Munich, Munich Inst Integrated Mat Energy & Proc Engn, Munich, Germany
关键词
MOLECULAR-DYNAMICS SIMULATIONS; FORCE-FIELD; ALANINE DIPEPTIDE; AQUEOUS-SOLUTION; MECHANICS; MODELS; PHASE; OPTIMIZATION; EQUILIBRIUM; WATER;
D O I
10.1063/5.0124538
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Neural network (NN) potentials are a natural choice for coarse-grained (CG) models. Their many-body capacity allows highly accurate approximations of the potential of mean force, promising CG simulations of unprecedented accuracy. CG NN potentials trained bottom-up via force matching (FM), however, suffer from finite data effects: They rely on prior potentials for physically sound predictions outside the training data domain, and the corresponding free energy surface is sensitive to errors in the transition regions. The standard alternative to FM for classical potentials is relative entropy (RE) minimization, which has not yet been applied to NN potentials. In this work, we demonstrate, for benchmark problems of liquid water and alanine dipeptide, that RE training is more data efficient, due to accessing the CG distribution during training, resulting in improved free energy surfaces and reduced sensitivity to prior potentials. In addition, RE learns to correct time integration errors, allowing larger time steps in CG molecular dynamics simulation, while maintaining accuracy. Thus, our findings support the use of training objectives beyond FM, as a promising direction for improving CG NN potential's accuracy and reliability. Published under an exclusive license by AIP Publishing.
引用
收藏
页数:12
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