Characterization of Novel Erwinia amylovora Jumbo Bacteriophages from Eneladusvirus Genus

被引:20
作者
Kim, Sang Guen [1 ,2 ]
Lee, Sung Bin [1 ,2 ]
Giri, Sib Sankar [1 ,2 ]
Kim, Hyoun Joong [1 ,2 ]
Kim, Sang Wha [1 ,2 ]
Kwon, Jun [1 ,2 ]
Park, Jungkum [3 ]
Roh, Eunjung [3 ]
Park, Se Chang [1 ,2 ]
机构
[1] Seoul Natl Univ, Coll Vet Med, Lab Aquat Biomed, Seoul 08826, South Korea
[2] Seoul Natl Univ, Res Inst Vet Sci, Seoul 08826, South Korea
[3] Rural Dev Adm, Crop Protect Div, Natl Inst Agr Sci, Wonju 55365, South Korea
来源
VIRUSES-BASEL | 2020年 / 12卷 / 12期
关键词
jumbo phage; giant phage; bacteriophage; Eneladusvirus; Erwinia amylovora; fire blight; COMPLETE GENOME SEQUENCE; NUCLEUS-LIKE COMPARTMENT; BIOLOGICAL-CONTROL; PHAGE; DNA; PROTEINS; PATHOGEN; FORMS;
D O I
10.3390/v12121373
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Jumbo phages, which have a genome size of more than 200 kb, have recently been reported for the first time. However, limited information is available regarding their characteristics because few jumbo phages have been isolated. Therefore, in this study, we aimed to isolate and characterize other jumbo phages. We performed comparative genomic analysis of three Erwinia phages (pEa_SNUABM_12, pEa_SNUABM_47, and pEa_SNUABM_50), each of which had a genome size of approximately 360 kb (32.5% GC content). These phages were predicted to harbor 546, 540, and 540 open reading frames with 32, 34, and 35 tRNAs, respectively. Almost all of the genes in these phages could not be functionally annotated but showed high sequence similarity with genes encoded in Serratia phage BF, a member of Eneladusvirus. The detailed comparative and phylogenetic analyses presented in this study contribute to our understanding of the diversity and evolution of Erwinia phage and the genus Eneladusvirus.
引用
收藏
页数:18
相关论文
共 59 条
  • [1] Supersize me: Cronobacter sakazakii phage GAP32
    Abbasifar, Reza
    Griffiths, Mansel W.
    Sabour, Parviz M.
    Ackermann, Hans-Wolfgang
    Vandersteegen, Katrien
    Lavigne, Rob
    Noben, Jean-Paul
    Villa, Argentina Alanis
    Abbasifar, Arash
    Nash, John H. E.
    Kropinski, Andrew M.
    [J]. VIROLOGY, 2014, 460 : 138 - 146
  • [2] Characterization of two related Erwinia myoviruses that are distant relatives of the PhiKZ-like Jumbo phages
    Arens, Daniel K.
    Brady, T. Scott
    Carter, John L.
    Pape, Jenny A.
    Robinson, David M.
    Russell, Kerri A.
    Staley, Lyndsay A.
    Stettler, Jason M.
    Tateoka, Olivia B.
    Townsend, Michelle H.
    Whitley, Kiara V.
    Wienclaw, Trevor M.
    Williamson, Taryn L.
    Johnson, Steven M.
    Grose, Julianne H.
    [J]. PLOS ONE, 2018, 13 (07):
  • [3] Larger Than Life: Isolation and Genomic Characterization of a Jumbo Phage That Infects the Bacterial Plant Pathogen, Agrobacterium tumefaciens
    Attai, Hedieh
    Boon, Maarten
    Phillips, Kenya
    Noben, Jean-Paul
    Lavigne, Rob
    Brown, Pamela J. B.
    [J]. FRONTIERS IN MICROBIOLOGY, 2018, 9
  • [4] GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
    Besemer, J
    Lomsadze, A
    Borodovsky, M
    [J]. NUCLEIC ACIDS RESEARCH, 2001, 29 (12) : 2607 - 2618
  • [5] ResFinder 4.0 for predictions of phenotypes from genotypes
    Bortolaia, Valeria
    Kaas, Rolf S.
    Ruppe, Etienne
    Roberts, Marilyn C.
    Schwarz, Stefan
    Cattoir, Vincent
    Philippon, Alain
    Allesoe, Rosa L.
    Rebelo, Ana Rita
    Florensa, Alfred Ferrer
    Fagelhauer, Linda
    Chakraborty, Trinad
    Neumann, Bernd
    Werner, Guido
    Bender, Jennifer K.
    Stingl, Kerstin
    Minh Nguyen
    Coppens, Jasmine
    Xavier, Basil Britto
    Malhotra-Kumar, Surbhi
    Westh, Henrik
    Pinholt, Mette
    Anjum, Muna F.
    Duggett, Nicholas A.
    Kempf, Isabelle
    Nykasenoja, Suvi
    Olkkola, Satu
    Wieczorek, Kinga
    Amaro, Ana
    Clemente, Lurdes
    Mossong, Joel
    Losch, Serge
    Ragimbeau, Catherine
    Lund, Ole
    Aarestrup, Frank M.
    [J]. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 2020, 75 (12) : 3491 - 3500
  • [6] Boulanger Pascale, 2009, V502, P227, DOI 10.1007/978-1-60327-565-1_13
  • [7] Isolation and characterization of eight bacteriophages infecting Erwinia amylovora and their potential as biological control agents in British Columbia, Canada
    Boule, J.
    Sholberg, P. L.
    Lehman, S. M.
    O'Gorman, D. T.
    Svircev, A. M.
    [J]. CANADIAN JOURNAL OF PLANT PATHOLOGY-REVUE CANADIENNE DE PHYTOPATHOLOGIE, 2011, 33 (03): : 308 - 317
  • [8] Buttimer Colin, 2017, Front Microbiol, V8, P44, DOI 10.3389/fmicb.2017.00044
  • [9] DNAPlotter: circular and linear interactive genome visualization
    Carver, Tim
    Thomson, Nick
    Bleasby, Alan
    Berriman, Matthew
    Parkhill, Julian
    [J]. BIOINFORMATICS, 2009, 25 (01) : 119 - 120
  • [10] Casey E, 2017, GENOME ANNOUNCEMENTS, V5, DOI 10.1128/genomeA.00211-17