SEASIM-NEAM: A Spatially-Explicit Agent-based SIMulator of North East Atlantic Mackerel population dynamics

被引:6
作者
Boyd, Robin [1 ]
Walker, Nicola [2 ]
Hyder, Kieran [2 ,3 ]
Thorpe, Robert [2 ]
Roy, Shovonlal [4 ]
Sibly, Richard [5 ]
机构
[1] Ctr Ecol & Hydrol, Wallingford, Oxon, England
[2] Ctr Environm Fisheries & Aquaculture, Sci, Lowestoft, Suffolk, England
[3] Univ East Anglia, Sch Environm Sci, Norwich, Norfolk, England
[4] Univ Reading, Dept Geog & Environm Sci, Reading, Berks, England
[5] Univ Reading, Sch Biol Sci, Reading, Berks, England
关键词
Atlantic mackerel; Individual-based model; Bioenergetics; Spatially-explicit; Approximate bayesian computation; INDIVIDUAL-BASED MODELS; SCOMBER-SCOMBRUS; TEMPERATURE; MIGRATION; GROWTH; SIZE; BAY; ANCHOVY; SYSTEMS; ENERGY;
D O I
10.1016/j.mex.2020.101044
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In 2018 we published a spatially-explicit individual-based model (IBM) that uses satellite-derived maps of food availability and temperature to predict Northeast Atlantic mackerel (Scomber scombrus, NEAM) population dynamics. Since then, to address various ecological questions, we have extended the IBM to include additional processes and data. Throughout its development, technical documents have been provided in the form of e.g. supplementary information to published articles. However, we acknowledge that it would be difficult for potential users to collate information from separate supplementary documents and gain a full understanding of the current state of the IBM. Here, we provide a full technical specification of the latest version of our IBM. The technical specification is provided in the standard ODD (Overview, Design concepts and Details) format, and supplemented by a TRACE (TRAnsparent and Comprehensive model Evaludation) document. For the first time, we give our model the acronym SEASIM-NEAM: a Spatially-Explicit Agent-based SIMulator of North East Atlantic Mackerel population dynamics. This article supersedes previous documentation. Going forward we hope that this article will stimulate development of similar models. This article collates improvements that have been made to SEASIM-NEAM over time. Crown Copyright (C) 2020 Published by Elsevier B.V.
引用
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页数:21
相关论文
共 82 条
[1]   Calibration of a bioenergetics model linking primary production to Atlantic menhaden Brevoortia tyrannus growth in Chesapeake Bay [J].
Annis, Eric R. ;
Houde, Edward D. ;
Harding, Lawrence W., Jr. ;
Mallonee, Michael E. ;
Wilberg, Michael J. .
MARINE ECOLOGY PROGRESS SERIES, 2011, 437 :253-267
[2]  
[Anonymous], 2014, ICES J MAR SCI
[3]   Spatial distribution of the stomach weights of juvenile anchovy (Engraulis encrasicolus L.) in the Bay of Biscay [J].
Bachiller, Eneko ;
Cotano, Unai ;
Boyra, Guillermo ;
Irigoien, Xabier .
ICES JOURNAL OF MARINE SCIENCE, 2013, 70 (02) :362-378
[4]   MUTUAL INTERFERENCE BETWEEN PARASITES OR PREDATORS AND ITS EFFECT ON SEARCHING EFFICIENCY [J].
BEDDINGTON, JR .
JOURNAL OF ANIMAL ECOLOGY, 1975, 44 (01) :331-340
[5]  
Boyd R, 2020, POTENTIAL CONSEQUENC
[6]   Simulating the summer feeding distribution of Northeast Atlantic mackerel with a mechanistic individual-based model [J].
Boyd, R. J. ;
Sibly, R. ;
Hyder, K. ;
Walker, N. ;
Thorpe, R. ;
Roy, S. .
PROGRESS IN OCEANOGRAPHY, 2020, 183
[7]   A general approach to incorporating spatial and temporal variation in individual-based models of fish populations with application to Atlantic mackerel [J].
Boyd, Robin ;
Roy, Shovonlal ;
Sibly, Richard ;
Thorpe, Robert ;
Hyder, Kieran .
ECOLOGICAL MODELLING, 2018, 382 :9-17
[8]  
Brodziak J., 2011, NOAA Technical Memorandum NMFSF/ SPO-119
[9]   Quantifying the influence of geography and environment on the northeast Atlantic mackerel spawning distribution [J].
Brunel, Thomas ;
van Damme, Cindy J. G. ;
Samson, Melvin ;
Dickey-Collas, Mark .
FISHERIES OCEANOGRAPHY, 2018, 27 (02) :159-173
[10]   A comparison of C/B ratios from studies using receiver operating characteristic curve analysis [J].
Cantor, SB ;
Sun, CC ;
Tortolero-Luna, G ;
Richards-Kortum, R ;
Follen, M .
JOURNAL OF CLINICAL EPIDEMIOLOGY, 1999, 52 (09) :885-892