The complete mitochondrial genome of Acanthastrea maxima (Cnidaria, Scleractinia, Lobophylliidae)

被引:11
作者
Arrigoni, Roberto [1 ]
Vacherie, Benoit [2 ]
Benzoni, Francesca [1 ]
Barbe, Valerie [2 ]
机构
[1] Univ Milano Bicocca, Dept Biosci & Biotechnol, I-20126 Milan, Italy
[2] CEA, DSV, IG, Genoscope, Evry, France
关键词
Coral; genome organization; group I intron; mitogenome; threatened species; CORALS; ANTHOZOA;
D O I
10.3109/19401736.2014.926489
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete nucleotide sequence of the mitochondrial genome of the scleractinian coral Acanthastrea maxima has been obtained, representing the first sequenced mitogenome of a member of the Lobophylliidae. The mitochondrial genome is 18,278 bp in length, the longest sequence among the robust corals sequenced mitogenome to date. The overall GC composition (33.7%) and the gene arrangement are similar to those of the other scleractinian corals, including 13 protein-coding genes, 2 rRNA genes (rnl and rns) and 2 tRNA genes (tRNA-Met and tRNA-Trp). All genes except tRNA-Trp, atp8, cox1, tRNA-Met and rnl are engulfed by a large group I intron in the nad5 gene. A second group I intron of 1077bp in length is inserted in the cox1 gene and it encodes a putative homing endonuclease. There are four regions of gene overlaps totalling 22bp and nine intergenic spacer regions for a total of 2220bp, of which the cox3-cox2 region may correspond to the putative control region.
引用
收藏
页码:927 / 928
页数:2
相关论文
共 10 条
[1]  
[Anonymous], 2000, CORALS WORLD
[2]   Lobophylliidae (Cnidaria, Scleractinia) reshuffled: Pervasive non-monophyly at genus level [J].
Arrigoni, Roberto ;
Terraneo, Tullia Isotta ;
Galli, Paolo ;
Benzoni, Francesca .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2014, 73 :60-64
[3]   Molecular phylogeny of the Robust clade (Faviidae, Mussidae, Merulinidae, and Pectiniidae): An Indian Ocean perspective [J].
Arrigoni, Roberto ;
Stefani, Fabrizio ;
Pichon, Michel ;
Galli, Paolo ;
Benzoni, Francesca .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2012, 65 (01) :183-193
[4]   Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia) [J].
Fukami, H ;
Knowlton, N .
CORAL REEFS, 2005, 24 (03) :410-417
[5]   Novel group I introns encoding a putative homing endonuclease in the mitochondrial cox1 gene of scleractinian corals [J].
Fukami, Hironobu ;
Chen, Chaolun Allen ;
Chiou, Chi-Yung ;
Knowlton, Nancy .
JOURNAL OF MOLECULAR EVOLUTION, 2007, 64 (05) :591-600
[6]  
Lin MF, 2011, ZOOL STUD, V50, P513
[7]   Naked corals: Skeleton loss in Scleractinia [J].
Medina, Monica ;
Collins, Allen G. ;
Takaoka, Tori L. ;
Kuehl, Jennifer V. ;
Boore, Jeffrey L. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (24) :9096-9100
[8]  
Turak E, 2008, IUCN 2013 IUCN RED L
[9]   The mitochondrial genome of Acropora tenuis (Cnidaria: Scleractinia) contains a large group I intron and a candidate control region [J].
van Oppen, MJH ;
Catmull, J ;
McDonald, BJ ;
Hislop, NR ;
Hagerman, PJ ;
Miller, DJ .
JOURNAL OF MOLECULAR EVOLUTION, 2002, 55 (01) :1-13
[10]   Complete mitochondrial genome of the brain coral Platygyra carnosus [J].
Wang, Mingling ;
Sun, Jin ;
Li, Jiaqi ;
Qiu, Jian-Wen .
MITOCHONDRIAL DNA, 2013, 24 (03) :194-195